Bernd Bodenmiller

SIB Swiss Institute of Bioinformatics — Switzerland

Biochemistry, Genetics and Molecular Biology · Life Sciences

66h-index24.9kcitations344works8.72yr avg

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Research Topics

Single-cell and spatial transcriptomics(103), Cell Image Analysis Techniques(89), Cancer Immunotherapy and Biomarkers(52), Cancer Genomics and Diagnostics(47), Immunotherapy and Immune Responses(33)

Publications337 total

Exploiting pair correlation function to describe biological tissue structure

2025Open Access

The chromatin guardian ATRX is a strong prognostic biomarker in melanoma

Scientific Reports·2025Open Access

SpaCEy: Discovery of Functional Spatial Tissue Patterns by Association with Clinical Features Using Explainable Graph Neural Networks

2025Open Access

High-resolution imaging mass cytometry to map subcellular structures

Repository for Publications and Research Data (ETH Zurich)·2025Open Access

Compressed sensing expands the multiplexity of imaging mass cytometry

Nature Communications·2025Open Access

Table S2 from Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

2025Open Access

Figure S2 from Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

2025Open Access

Figure S3 from Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

2025Open Access

Figure S4 from Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

2025Open Access

Table S4 from Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

2025Open Access

Figure S7 from Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

2025Open Access

Figure S5 from Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

2025Open Access

Figure S6 from Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

2025Open Access

Figure S8 from Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

2025Open Access

Figure S1 from Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

2025Open Access

Supplementary Tables 1, 3, 5-7 from Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

2025Open Access

Comprehensive characterization of early-stage Non-Small Cell Lung cancers with multi-modal data integration

2025Open Access

Cellohood: multi-granular discovery of cellular neighborhoods with a permutation-invariant set transformer auto-encoder

2025Open Access

High-resolution imaging mass cytometry to map subcellular structures

4 cited

Nature Methods·2025· 4 citedOpen Access

37Integrative multi-omic characterization of the immune landscape in renal cell carcinoma

The Oncologist·2025Open Access

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Frequent Co-authors

Ruedi Aebersold(15), Vito Riccardo Tomaso Zanotelli(10), Carlos Caldas(8), Oscar M. Rueda(8), Shahar Alon(7), Samuel Aparício(7), Emma Laks(7), Ciara H. O’Flanagan(7), Sandra Tietscher(7), H. Raza Ali(6), Jonas Windhager(6), Garry P. Nolan(6), Anubhav Sinha(6), Asmamaw T. Wassie(6), Yi Cui(6), Shankar Balasubramanian(6), Dario Bressan(6), Alejandra Bruna(6), Maurizio Callari(6), Ian G. Cannell(6)