Jonas Windhager

ETH Zurich — Switzerland

Biochemistry, Genetics and Molecular Biology · Life Sciences

11h-index2.5kcitations49works2.02yr avg
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Research Topics

Single-cell and spatial transcriptomics(20), Cell Image Analysis Techniques(10), ICT Impact and Policies(7), Cancer Genomics and Diagnostics(6), Marketing and Advertising Strategies(6)

Publications48 total

napari: a multi-dimensional image viewer for Python
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
napari: a multi-dimensional image viewer for Python
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
napari: a multi-dimensional image viewer for Python
Zenodo (CERN European Organization for Nuclear Research)·2025· 1 citedOpen Access
Multi-modal image analysis for large-scale cancer tissue studies within IMMUcan
Universität Zürich, ZORA·2025Open Access
Multi-modal image analysis for large-scale cancer tissue studies within IMMUcan
Cell Reports Methods·2025· 1 citedOpen Access
Droplet microfluidics–based detection of rare antibiotic-resistant subpopulations in <i>Escherichia coli</i> from bloodstream infections
Science Advances·2025· 14 citedOpen Access
2024 OME-NGFF workflows hackathon
2025Open Access
2024 OME-NGFF workflows hackathon
2025Open Access
Consortium Author List from Cancer Research in the Age of Spatial Omics: Lessons from IMAXT
2025Open Access
Consortium Author List from Cancer Research in the Age of Spatial Omics: Lessons from IMAXT
2025Open Access
Cancer Research in the Age of Spatial Omics: Lessons from IMAXT
Cancer Discovery·2025· 3 citedOpen Access
Data from Cancer Research in the Age of Spatial Omics: Lessons from IMAXT
2025Open Access
Multi-modal image analysis for large scale cancer tissue studies within IMMUcan
2025· 3 citedOpen Access
<scp>Points2Regions</scp> : Fast, interactive clustering of imaging‐based spatial transcriptomics data
Cytometry Part A·2024· 6 citedOpen Access
1P Integrated data analysis within IMMUcan identifies prognostic features of early NSCLC
Immuno-Oncology Technology·2023Open Access
199P Scalable multiplexed image analysis across cancer types as part of the IMMUcan consortium
Immuno-Oncology Technology·2023Open Access
An end-to-end workflow for multiplexed image processing and analysis
Nature Protocols·2023· 233 cited
IMC Segmentation Pipeline results of example IMC data
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
IMC Segmentation Pipeline results of example IMC data
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
steinbock results of IMC example data
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
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Frequent Co-authors

Nils Eling(24), Bernd Bodenmiller(23), Dario Bressan(16), Gregory J. Hannon(16), N. A. Walton(14), Carlos Caldas(13), Fatime Qosaj(12), Oscar M. Rueda(12), Alejandra Bruna(11), A. Dariush(11), Claire M. Mulvey(11), Andrew Roth(11), Ignacio Vázquez-Garćıa(11), Spencer S. Watson(11), Samuel Aparício(10), Maurizio Callari(10), E. A. González-Solares(10), Wendy Greenwood(10), Laura Kuett(10), Giulia Lerda(10)