Begum Alaybeyoglu

490 BioTech (United States) — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

8h-index209citations20works0.72yr avg
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Research Topics

Antibiotic Resistance in Bacteria(5), RNA Interference and Gene Delivery(5), Bioinformatics and Genomic Networks(4), Antimicrobial Peptides and Activities(4), Osteoarthritis Treatment and Mechanisms(3)

Publications20 total

Pathway‐Based Similarity Measurement to Quantify Transcriptomics Similarity Between Human Tissues and Preclinical Models
Clinical Pharmacology & Therapeutics·2024Open Access
Pathway-based similarity measurement to quantify transcriptomics similarity between human tissues and preclinical models
2024Open Access
Effects of dexamethasone and IGF-1 on post-traumatic osteoarthritis-like catabolic changes in a human cartilage-bone-synovium microphysiological system in space and ground control tissues on earth
Frontiers in Space Technologies·2024· 2 citedOpen Access
Inflammatory cytokines and mechanical injury induce post-traumatic osteoarthritis-like changes in a human cartilage-bone-synovium microphysiological system
Arthritis Research & Therapy·2022· 39 citedOpen Access
Inflammatory cytokines and mechanical injury induce post-traumatic osteoarthritis-like changes in a human cartilage-bone-synovium microphysiological system
Research Square (Research Square)·2022Open Access
Estimating drug potency in the competitive target mediated drug disposition (TMDD) system when the endogenous ligand is included.
Journal of Pharmacokinetics and Pharmacodynamics·2021· 7 cited
Assessment of Drug-Induced Toxicity Biomarkers in the Brain Microphysiological System (MPS) Using Targeted and Untargeted Molecular Profiling
Frontiers in Big Data·2019· 19 citedOpen Access
pVEC hydrophobic N‐terminus is critical for antibacterial activity
Journal of Peptide Science·2018· 16 cited
The effect of a beta-lactamase inhibitor peptide on bacterial membrane structure and integrity: a comparative study
Journal of Peptide Science·2017· 11 cited
Response of Escherichia coli to Prolonged Berberine Exposure
Research at the University of Copenhagen (University of Copenhagen)·2017
Response of Escherichia coli to Prolonged Berberine Exposure
2017· 1 citedOpen Access
Response of <i>Escherichia coli</i> to Prolonged Berberine Exposure
Microbial Drug Resistance·2016· 23 cited
Toward Community Standards and Software for Whole-Cell Modeling
IEEE Transactions on Biomedical Engineering·2016· 60 citedOpen Access
Insights into membrane translocation of the cell-penetrating peptide pVEC from molecular dynamics calculations
Figshare·2016Open Access
FlyOde - a platform for community curation and interactive visualization of dynamic gene regulatory networks in Drosophila eye development
F1000Research·2015· 4 citedOpen Access
FlyOde - a platform for community curation and interactive visualization of dynamic gene regulatory networks in Drosophila eye development [version 1; referees: 2 approved]
2015· 1 cited
Insights into membrane translocation of the cell-penetrating peptide pVEC from molecular dynamics calculations
Journal of Biomolecular Structure and Dynamics·2015· 15 cited
A novel chimeric peptide with antimicrobial activity
Journal of Peptide Science·2015· 11 cited
Analysis of Membrane Translocation Simulations using Dimensionality Reduction
Biophysical Journal·2014Open Access
Bacterial Uptake of the Cell-Penetrating Peptide pVEC
Biophysical Journal·2012Open Access

Frequent Co-authors

Elif Özkırımlı(9), Murat Cirit(6), Berna Sarıyar Akbulut(6), Garima Dwivedi(3), Lisa L. Flaman(3), Eliot H. Frank(3), Stephen B. Trippel(3), Alan J. Grodzinsky(3), Fatma Gizem Avcı(3), Kubra Karaosmanoglu Yoneten(3), André Struglics(2), Susan Chubinskya(2), Vicki Rosen(2), Nilay Büdeyri Gökgöz(2), Nihat Alpagu Sayar(2), Dilek Kazan(2), Stefan A. Koestler(2), Christian X. Weichenberger(2), Arzu Çelik(2), Paarth Parekh(2)