Michael Hucka

Biochemistry, Genetics and Molecular Biology · Life Sciences

42h-index15.6kcitations170works0.02yr avg
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Research Topics

Gene Regulatory Network Analysis(94), Microbial Metabolic Engineering and Bioproduction(86), Bioinformatics and Genomic Networks(85), Scientific Computing and Data Management(41), Genetics, Bioinformatics, and Biomedical Research(14)

Publications160 total

Introducing the InvenioRDM GitHub Archiver (IGA)
2023Open Access
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2023· 7 citedOpen Access
Nine best practices for research software registries and repositories
PeerJ Computer Science·2022· 15 citedOpen Access
Peer Review #2 of "Nine best practices for research software registries and repositories (v0.2)"
2022Open Access
Systems Biology Markup Language (SBML)
Encyclopedia of Computational Neuroscience·2022· 1 cited
Specifications of standards in systems and synthetic biology: status and developments in 2021
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2021· 3 citedOpen Access
Nine Best Practices for Research Software Registries and Repositories: A Concise Guide
HAL (Le Centre pour la Communication Scientifique Directe)·2020Open Access
libSBML-5.19.0
VU Research Portal·2020Open Access
<scp>SBML</scp> Level 3: an extensible format for the exchange and reuse of biological models
Molecular Systems Biology·2020· 297 citedOpen Access
Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2020· 11 citedOpen Access
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2020· 11 citedOpen Access
Specifications of standards in systems and synthetic biology: status and developments in 2020
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2020· 18 citedOpen Access
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2020· 40 citedOpen Access
BioModels—15 years of sharing computational models in life science
Nucleic Acids Research·2019· 406 citedOpen Access
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2019· 8 citedOpen Access
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2019· 272 citedOpen Access
libSBML-5.18.0
Zenodo (CERN European Organization for Nuclear Research)·2019Open Access
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
Nature Protocols·2019· 1.3k citedOpen Access
Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices
Methods in molecular biology·2019· 7 cited
Harmonizing semantic annotations for computational models in biology
Briefings in Bioinformatics·2018· 82 citedOpen Access
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Frequent Co-authors

Nicolas Le Novère(23), Sarah Keating(21), Andrew Finney(15), Frank Bergmann(14), Dagmar Waltemath(13), Andreas Dräger(12), Herbert M. Sauro(11), Stefan Hoops(11), Chris J. Myers(11), Sven Sahle(10), Nicolás Rodríguez(10), Darren J. Wilkinson(10), Lucian P. Smith(10), James C. Schaff(8), Pedro Mendes(7), Camille Laibe(7), Martin Golebiewski(7), Brett G. Olivier(7), John C. Doyle(6), Bernhard Ø. Palsson(6)