Lucian P. Smith

University of Washington — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

25h-index2.3kcitations91works0.82yr avg
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Research Topics

Gene Regulatory Network Analysis(47), Bioinformatics and Genomic Networks(29), Microbial Metabolic Engineering and Bioproduction(29), Scientific Computing and Data Management(21), Semantic Web and Ontologies(10)

Publications89 total

Verification and reproducible curation of the BioModels repository
PLoS Computational Biology·2025Open Access
SBMLNetwork: A framework for standards-based visualization of biochemical models
PLoS Computational Biology·2025Open Access
Discovering subnetworks in SBML models
Bioinformatics·2025Open Access
SBMLNetwork: a framework for standards-based visualization of biochemical models
2025Open Access
Speciated evolution of oscillatory mass-action chemical reaction networks
2025Open Access
From FAIR to CURE: Guidelines for Computational Models of Biological Systems.
PubMed·2025· 3 citedOpen Access
Verification and reproducible curation of the BioModels repository
2025Open Access
Curating models from BioModels: Developing a workflow for creating OMEX files
PLoS ONE·2024Open Access
An Update to the SBML Human-Readable Antimony Language
PubMed·2024Open Access
Signal integration and integral feedback control with biochemical reaction networks
2024· 1 citedOpen Access
Curating models from BioModels: Developing a workflow for creating OMEX files
2024Open Access
MakeSBML: a tool for converting between Antimony and SBML
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2024· 3 citedOpen Access
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2024· 4 citedOpen Access
VSCode-Antimony: a source editor for building, analyzing, and translating antimony models
Bioinformatics·2023· 1 citedOpen Access
MakeSBML: A tool for converting between Antimony and SBML
arXiv (Cornell University)·2023Open Access
Adapting modeling and simulation credibility standards to computational systems biology
Journal of Translational Medicine·2023· 18 citedOpen Access
SBML level 3 package: spatial processes, version 1, release 1
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2023· 6 citedOpen Access
Adapting Modeling and Simulation Credibility Standards to Computational Systems Biology
arXiv (Cornell University)·2023· 1 citedOpen Access
libRoadRunner 2.0: a high performance SBML simulation and analysis library
Bioinformatics·2022· 43 citedOpen Access
Somatic whole genome dynamics of precancer in Barrett’s esophagus reveals features associated with disease progression
Nature Communications·2022· 40 citedOpen Access
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Frequent Co-authors

Michael Hucka(22), Frank Bergmann(18), Herbert M. Sauro(17), Sarah Keating(14), Dagmar Waltemath(13), Matthias König(13), Chris J. Myers(13), James C. Schaff(11), Stefan Hoops(10), Brett G. Olivier(10), Sven Sahle(10), Darren J. Wilkinson(10), Andreas Dräger(8), Nicolas Le Novère(8), Mary K. Kuhner(8), David Nickerson(7), Ion I. Moraru(6), Kiri Choi(6), Fengkai Zhang(5), Andrew Finney(5)