Stephen D. Shank

Temple College — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

14h-index2.7kcitations37works1.72yr avg
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Research Topics

Genomics and Phylogenetic Studies(13), SARS-CoV-2 and COVID-19 Research(8), Evolution and Genetic Dynamics(7), Viral gastroenteritis research and epidemiology(6), Genetic diversity and population structure(5)

Publications37 total

WITHDRAWN: Defective HIV DNA genomes provide ancestralrelevance critical for phylogenetic inference of reservoir dynamics
2025Open Access
Ecological diversification of sea catfishes is accompanied by genome-wide signatures of positive selection
Nature Communications·2024· 5 citedOpen Access
Positive selection, genetic recombination, and intra-host evolution in novel equine coronavirus genomes and other members of the <i>Embecovirus</i> subgenus
Microbiology Spectrum·2024Open Access
Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy
BMC Bioinformatics·2023· 1 citedOpen Access
Natural selection differences detected in key protein domains between non-pathogenic and pathogenic Feline Coronavirus phenotypes
2023· 5 citedOpen Access
Natural selection differences detected in key protein domains between non-pathogenic and pathogenic feline coronavirus phenotypes
Virus Evolution·2023· 18 citedOpen Access
RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis
PLoS ONE·2022· 9 citedOpen Access
Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City
Nature Communications·2022· 46 citedOpen Access
Defective HIV DNA genomes provide ancestral relevance critical for phylogenetic inference of reservoir dynamics
2022Open Access
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function
Molecular Biology and Evolution·2022· 116 citedOpen Access
Capturing intrahost recombination of SARS-CoV-2 during superinfection with Alpha and Epsilon variants in New York City
2022· 8 citedOpen Access
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function
2022· 44 citedOpen Access
RASCL: Rapid Assessment Of SARS-CoV-2 Clades Through Molecular Sequence Analysis
2022· 3 citedOpen Access
High-Throughput Single-Cell Sequencing for Retroviral Reservoir Characterization
SSRN Electronic Journal·2022Open Access
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages
Cell·2021· 268 citedOpen Access
Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy
2021Open Access
Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes
PLoS ONE·2021· 34 citedOpen Access
The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscape
2021· 89 citedOpen Access
Evolution of Viral Genomes: Interplay Between Selection, Recombination, and Other Forces v1
2021Open Access
Extra base hits: widespread empirical support for instantaneous multiple-nucleotide changes
2020· 4 citedOpen Access
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Frequent Co-authors

Sergei L. Kosakovsky Pond(26), Steven Weaver(12), Alexander G. Lucaci(10), Anton Nekrutenko(9), Brittany Rife Magalis(7), Jordan D. Zehr(7), Darren P. Martin(6), Ben Murrell(5), Dave Bouvier(5), Marco Salemi(5), Stephanie J. Spielman(4), Sadie R Wisotsky(4), Eduan Wilkinson(4), Jennifer Giandhari(4), Richard Lessells(4), Ravindra K. Gupta(4), Joel O. Wertheim(4), Gordon W. Harkins(4), Philippe Lemey(4), Oscar A. MacLean(4)