Arnaud Krebs

European Bioinformatics Institute — United Kingdom

Biochemistry, Genetics and Molecular Biology · Life Sciences

22h-index3.5kcitations53works1.32yr avg
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Research Topics

Genomics and Chromatin Dynamics(32), Epigenetics and DNA Methylation(19), RNA modifications and cancer(14), RNA Research and Splicing(10), Cancer-related gene regulation(9)

Publications53 total

Single-Molecule DNA Footprinting and Transcription Imaging Reveal the Molecular Mechanisms of Promoter Dynamics
2025Open Access
Enhancer-promoter compatibility is mediated by the promoter-proximal region
2025· 1 citedOpen Access
FootprintCharter: unsupervised detection and quantification of footprints in single molecule footprinting data
Bioinformatics·2025Open Access
Molecular co-accessibility identifies coordinated regulation between distant <i>cis</i> -regulatory elements
2025Open Access
FootprintCharter: unsupervised detection and quantification of footprints in single molecule footprinting data
2025· 1 citedOpen Access
Mouse promoters are characterised by low occupancy and high turnover of RNA polymerase II
Molecular Systems Biology·2025· 3 citedOpen Access
Cumulative TF binding and H3K27 Acetylation drive enhancer activation frequency
2025· 4 citedOpen Access
Mammalian promoters are characterised by low occupancy and high turnover of RNA polymerase II
2024· 1 citedOpen Access
Identification of transcription factor co-binding patterns with non-negative matrix factorization
Nucleic Acids Research·2024· 3 citedOpen Access
Identification of transcription factor co-binding patterns with non-negative matrix factorization
Zenodo (CERN European Organization for Nuclear Research)·2024Open Access
Relevance of <scp>DNA</scp> methylation at enhancers for the acquisition of cell identities
FEBS Letters·2023· 15 citedOpen Access
Identification of transcription factor co-binding patterns with non-negative matrix factorization
2023Open Access
Identification of transcription factor co-binding patterns with non-negative matrix factorization
2023Open Access
Single-molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation
Molecular Cell·2023· 99 citedOpen Access
DNA sequence and chromatin modifiers cooperate to confer epigenetic bistability at imprinting control regions
Nature Genetics·2022· 47 citedOpen Access
Cofactors: a new layer of specificity to enhancer regulation
Trends in Biochemical Sciences·2022· 3 cited
Single molecule multi-omics reveals context-dependent regulation of enhancers by DNA methylation
2022· 4 citedOpen Access
Genome-wide quantification of transcription factor binding at single-DNA-molecule resolution using methyl-transferase footprinting
Nature Protocols·2021· 22 citedOpen Access
BANP opens chromatin and activates CpG-island-regulated genes
Nature·2021· 98 citedOpen Access
Studying transcription factor function in the genome at molecular resolution
Trends in Genetics·2021· 26 cited
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Frequent Co-authors

Dirk Schübeler(16), Làszlò Tora(11), Rozemarijn Kleinendorst(10), Guido Barzaghi(10), Lukas Burger(7), Elisa Kreibich(6), Dilek Imanci(4), Dominik Hartl(4), Nacho Molina(4), Judith B. Zaugg(4), Ieva Rauluševičiūtė(4), Timothée Launay(4), Sarvesh Nikumbh(4), Boris Lenhard(4), Jaime A. Castro-Mondragón(4), Anthony Mathelier(4), Tuncay Baubec(3), Krishanpal Karmodiya(3), Leslie Hoerner(3), Josephine Jüttner(3)