Sreenath Nair

European Bioinformatics Institute — United Kingdom

Biochemistry, Genetics and Molecular Biology · Life Sciences

13h-index11.4kcitations33works9.62yr avg
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Research Topics

Protein Structure and Dynamics(22), Enzyme Structure and Function(17), Advanced Proteomics Techniques and Applications(7), Bioinformatics and Genomic Networks(6), Microbial Metabolic Engineering and Bioproduction(5)

Publications33 total

Associating protein residues in the literature with structural data
Acta Crystallographica Section D Structural Biology·2026Open Access
PDBe-KB Complexes: Enabling Functional Insight from Macromolecular Complexes in the PDB
Journal of Molecular Biology·2025Open Access
AlphaFold Protein Structure Database 2025: a redesigned interface and updated structural coverage
Nucleic Acids Research·2025· 8 citedOpen Access
Linking protein residues in literature and structure
2025· 1 citedOpen Access
PDBe: enhanced structural data exploration to facilitate discovery
Nucleic Acids Research·2025· 1 citedOpen Access
MolViewSpec: a Mol* extension for describing and sharing molecular visualizations
Nucleic Acids Research·2025· 2 citedOpen Access
<scp>PDBe</scp> tools for an in‐depth analysis of small molecules in the Protein Data Bank
Protein Science·2025· 8 citedOpen Access
AlphaFold Protein Structure Database and 3D-Beacons: New Data and Capabilities
Journal of Molecular Biology·2025· 72 citedOpen Access
Enhancing structural data connectivity in the Protein Data Bank
Faculty of 1000 Research Ltd·2025Open Access
PDBe tools for an in-depth analysis of small molecules in the Protein Data Bank
2024Open Access
Identifying protein conformational states in the Protein Data Bank: Toward unlocking the potential of integrative dynamics studies
Structural Dynamics·2024· 31 citedOpen Access
Harnessing the 3D‐Beacons Network: A Comprehensive Guide to Accessing and Displaying Protein Structure Data
Current Protocols·2024· 1 citedOpen Access
Alphafold Protein Structure Database and 3d-Beacons: New Data and Capabilities
SSRN Electronic Journal·2024· 1 citedOpen Access
PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank
Journal of Cheminformatics·2023· 15 citedOpen Access
Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data
Scientific Data·2023· 6 citedOpen Access
PDBImages: a command-line tool for automated macromolecular structure visualization
Bioinformatics·2023Open Access
AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences
Nucleic Acids Research·2023· 1.6k citedOpen Access
PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank
2023Open Access
PDBImages: A Command Line Tool for Automated Macromolecular Structure Visualization
arXiv (Cornell University)·2023Open Access
Automated Pipeline for Comparing Protein Conformational States in the PDB to AlphaFold2 Predictions
2023· 4 citedOpen Access
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Frequent Co-authors

Sameer Velankar(28), Mihály Váradi(24), Stephen Anyango(17), Mandar Deshpande(13), Ivanna Pidruchna(11), Nurul Nadzirin(9), Preeti Choudhary(9), Marcelo Querino Lima Afonso(9), Adam Midlik(9), David Armstrong(8), John M. Berrisford(8), Aleksandras Gutmanas(8), Lukáš Pravda(8), Agata Laydon(7), Augustin Žídek(7), David Sehnal(7), Damian Bertoni(6), Paulyna Magaña(6), Martin Steinegger(6), Romana Gáborová(6)