Lukáš Pravda

European Bioinformatics Institute — United Kingdom

Biochemistry, Genetics and Molecular Biology · Life Sciences

16h-index4.6kcitations76works0.72yr avg
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Research Topics

Protein Structure and Dynamics(28), Enzyme Structure and Function(24), Advanced Proteomics Techniques and Applications(19), Computational Drug Discovery Methods(15), Bioinformatics and Genomic Networks(10)

Publications76 total

Author response: Coenzyme-protein interactions since early life
2025Open Access
Coenzyme-protein interactions since early life
eLife·2025Open Access
Coenzyme-Protein Interactions since Early Life
2024· 1 citedOpen Access
Author response: Coenzyme-Protein Interactions since Early Life
2024Open Access
Improving generalisability of 3D binding affinity models in low data regimes
arXiv (Cornell University)·2024Open Access
Reviewer #1 (Public Review): Coenzyme-Protein Interactions since Early Life
2024Open Access
Author Response: Coenzyme-Protein Interactions since Early Life
2024Open Access
Reviewer #2 (Public Review): Coenzyme-Protein Interactions since Early Life
2024Open Access
Coenzyme-protein interactions since early life
eLife·2024· 1 citedOpen Access
Coenzyme-Protein Interactions since Early Life
2024· 5 citedOpen Access
PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank
Journal of Cheminformatics·2023· 15 citedOpen Access
Coenzyme-Protein Interactions since Early Life
2023· 2 citedOpen Access
The Protein Data Bank ( <scp>PDB</scp> ) and Macromolecular Structure Data Supporting Computer‐Aided Drug Design
Methods and principles in medicinal chemistry·2023· 4 citedOpen Access
PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank
2023Open Access
<scp>PDBe</scp> and <scp>PDBe‐KB</scp>: Providing high‐quality, up‐to‐date and integrated resources of macromolecular structures to support basic and applied research and education
Protein Science·2022· 34 citedOpen Access
PDBe-KB: collaboratively defining the biological context of structural data
Nucleic Acids Research·2021· 86 citedOpen Access
The Enzyme Portal: an integrative tool for enzyme information and analysis
FEBS Journal·2021· 7 citedOpen Access
PDBeCIF: an open-source mmCIF/CIF parsing and processing package
BMC Bioinformatics·2021· 9 citedOpen Access
PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data
Bioinformatics·2021· 23 citedOpen Access
Visualization and Analysis of Protein Structures with LiteMol Suite
Methods in molecular biology·2020· 7 cited
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Frequent Co-authors

Radka Svobodová Vařeková(33), Jaroslav Koča(31), David Sehnal(31), Karel Berka(20), Michal Otyepka(15), Sameer Velankar(13), Stanislav Geidl(11), Mihály Váradi(10), Crina-Maria Ionescu(10), Stephen Anyango(9), Sreenath Nair(8), David Armstrong(7), John M. Berrisford(7), Mandar Deshpande(7), Nurul Nadzirin(7), Marián Novotný(7), Preeti Choudhary(6), Alma Carolina Sánchez-Rocha(6), Mikhail Makarov(6), Klára Hlouchová(6)