Denise Kühnert

Robert Koch Institute — Germany

Mathematics · Physical Sciences

37h-index16.7kcitations112works1.22yr avg
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Research Topics

COVID-19 epidemiological studies(18), Tuberculosis Research and Epidemiology(16), SARS-CoV-2 and COVID-19 Research(16), Mycobacterium research and diagnosis(15), SARS-CoV-2 detection and testing(14)

Publications109 total

Differential sampling for genetic analyses of Treponema pallidum and for radiocarbon dating in archaeological bone
International Journal of Paleopathology·2025Open Access
CLASV: Rapid Lassa virus lineage assignment with random forest
PLoS neglected tropical diseases·2025Open Access
ggret: An R package for visualising and manipulating tree‑based phylogenetic networks
The Journal of Open Source Software·2025Open Access
Holistic forecasting for future pandemics: a review of pathogens, models, and data
Discover Public Health·2025· 1 citedOpen Access
Evolutionary and epidemic dynamics of COVID-19 in Germany exemplified by three Bayesian phylodynamic case studies
Bioinformatics and Biology Insights·2025· 1 citedOpen Access
Leveraging mobility data to analyze persistent SARS-CoV-2 mutations and inform targeted genomic surveillance
eLife·2025Open Access
Author response: Leveraging mobility data to analyze persistent SARS-CoV-2 mutations and inform targeted genomic surveillance
2025Open Access
Phylogenetic meta-analysis of persistent SARS-CoV-2 infections in immunocompromised individuals highlights the challenges of robust evolutionary rate estimation caused by low genetic diversity
Virus Evolution·2025· 2 citedOpen Access
Exploring the Spatial Distribution of Persistent SARS-CoV-2 Mutations - Leveraging mobility data for targeted sampling
2024Open Access
Author response: Exploring the Spatial Distribution of Persistent SARS-CoV-2 Mutations - Leveraging mobility data for targeted sampling
2024Open Access
The Way Forward to Embrace Artificial Intelligence in Public Health
American Journal of Public Health·2024· 11 citedOpen Access
Machine Learning Reveals Key Glycoprotein Mutations and Rapidly Assigns Lassa Virus Lineages
2024· 1 citedOpen Access
Importations of SARS-CoV-2 lineages decline after nonpharmaceutical interventions in phylogeographic analyses
Nature Communications·2024· 2 citedOpen Access
Leveraging mobility data to analyze persistent SARS-CoV-2 mutations and inform targeted genomic surveillance
eLife·2024Open Access
Exploring the Spatial Distribution of Persistent SARS-CoV-2 Mutations - Leveraging mobility data for targeted sampling
2024Open Access
Reviewer #2 (Public Review): Exploring the Spatial Distribution of Persistent SARS-CoV-2 Mutations - Leveraging mobility data for targeted sampling
2024Open Access
Reviewer #1 (Public Review): Exploring the Spatial Distribution of Persistent SARS-CoV-2 Mutations - Leveraging mobility data for targeted sampling
2024Open Access
Exploring the Spatial Distribution of Persistent SARS-CoV-2 Mutations - Leveraging mobility data for targeted sampling
2024· 1 citedOpen Access
Recombination-aware phylogenetic analysis sheds light on the evolutionary origin of SARS-CoV-2
Scientific Reports·2024· 4 citedOpen Access
Importations of SARS-CoV-2 lineages decline after nonpharmaceutical interventions in phylogeographic analyses
2023Open Access
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Frequent Co-authors

Tanja Stadler(17), Johannes Krause(12), Alexei J. Drummond(11), Timothy G. Vaughan(9), Alexander Herbig(9), Kirsten I. Bos(8), Louis du Plessis(6), Remco Bouckaert(5), Joëlle Barido‐Sottani(5), David A. Rasmussen(5), Maria A. Spyrou(5), Chieh‐Hsi Wu(4), Mathieu Fourment(4), Aditya Kumar Lankapalli(4), Jūlija Pečerska(4), Max von Kleist(4), Manja Marz(4), Felix M. Key(4), Wolfgang Haak(4), Arthur Kocher(4)