Tanja Stadler

SIB Swiss Institute of Bioinformatics — Switzerland

Earth and Planetary Sciences · Physical Sciences

68h-index25.5kcitations353works6.02yr avg
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Research Topics

Evolution and Paleontology Studies(99), Genomics and Phylogenetic Studies(94), Genetic diversity and population structure(56), COVID-19 epidemiological studies(47), Evolution and Genetic Dynamics(47)

Publications349 total

The relative contribution of close-proximity contacts, shared classroom exposure and indoor air quality to respiratory virus transmission in schools
Nature Communications·2025· 1 citedOpen Access
Single-cell phylodynamics reveal rapid late-stage colorectal cancer expansions
2025Open Access
Determinants and spatio-temporal structure of variability in wastewater SARS-CoV-2 viral load measurements in Switzerland: Key insights for future surveillance efforts
PLOS Water·2025Open Access
Robust real-time estimation of pathogen transmission dynamics from wastewater
2025· 1 citedOpen Access
Real-time outlier detection in digital PCR data for wastewater-based pathogen surveillance
2025Open Access
Genetic Cluster of Extended-Spectrum β-lactamase–Producing <i>Klebsiella pneumoniae</i> in Humans and Food, Switzerland, 2018–2019
Emerging infectious diseases·2025· 1 citedOpen Access
From clinics to sewers: leveraging environmental surveillance and whole genome sequencing to inform transmission of ESBL- <i>Escherichia coli</i> in Switzerland
2025· 1 citedOpen Access
Phylodynamic estimation of the within-host evolutionary rate of extended-spectrum beta-lactamase-producing Enterobacterales
Microbial Genomics·2025Open Access
Bayesian phylodynamics for developmental biology: incorporating age-dependence
2025· 1 citedOpen Access
Poultry farm density and proximity drive highly pathogenic avian influenza spread
Communications Biology·2025· 5 citedOpen Access
Characterizing influenza A virus lineages and clinically relevant mutations through high-coverage wastewater sequencing
Water Research·2025· 3 citedOpen Access
The relative contribution of close-proximity contacts, shared classroom exposure and indoor air quality to respiratory virus transmission in schools.
2025Open Access
Estimated transmission dynamics of SARS-CoV-2 variants from wastewater are unbiased and robust to differential shedding
Nature Communications·2025· 4 citedOpen Access
Characterizing Co-Circulating Respiratory Virus Genomic Diversity in Switzerland with Hybrid-Capture Sequencing and Phylogenetic Reconstructions: Insights into the 2023/24 Season
2025· 1 citedOpen Access
Response to “No evidence that transmissible cancer has shifted from emergence to endemism in Tasmanian devils”
2025· 1 citedOpen Access
Post-sampling degradation of viral RNA in wastewater impacts the quality of PCR-based concentration estimates
2025Open Access
Bayesian Phylodynamic Inference of Multitype Population Trajectories Using Genomic Data
Molecular Biology and Evolution·2025· 6 citedOpen Access
Determinants and spatio-temporal structure of variability in wastewater SARS-CoV-2 viral load measurements in Switzerland: key insights for future surveillance efforts
2025Open Access
Enhancing Evolutionary Timelines: The Impact of Stratigraphic Range Information on Phylogenetic Inference
2025· 2 citedOpen Access
Wastewater sequencing reveals the genomic landscape of Influenza A virus in Switzerland
2025· 1 citedOpen Access
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Frequent Co-authors

Alexei J. Drummond(10), Sebastian Bonhoeffer(10), Denise Kühnert(8), Timothy G. Vaughan(6), Jana S. Huisman(6), Alexandra Gavryushkina(5), David A. Rasmussen(5), Tracy A. Heath(5), Jérémie Scire(5), Nicola F. Müller(4), Chi Zhang(4), Sarah Nadeau(4), Huldrych F. Günthard(4), Oliver G. Pybus(4), Louis du Plessis(3), Andrew Rambaut(3), Roger D. Kouyos(3), Viktor von Wyl(3), Sabine Yerly(3), Jürg Böni(3)