Sebastian Bonhoeffer

ETH Zurich — Switzerland

Biochemistry, Genetics and Molecular Biology · Life Sciences

87h-index30.8kcitations358works2.02yr avg
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Research Topics

Evolution and Genetic Dynamics(124), HIV Research and Treatment(103), HIV/AIDS drug development and treatment(53), HIV/AIDS Research and Interventions(50), Mathematical and Theoretical Epidemiology and Ecology Models(48)

Publications358 total

Antimicrobial Combination Effects at Sub-inhibitory Doses do not Reliably Predict Effects at Inhibitory Concentrations
2026Open Access
Transfer potential of F-like plasmids in <i>Escherichia coli</i> differs by animal environment
2026
High-Throughput Quantification of Population Dynamics using Luminescence
2026· 1 citedOpen Access
High-Throughput Quantification of Population Dynamics using Luminescence
2026Open Access
Viral Simulation Reveals Overestimation Bias in Within-Host Phylodynamic Migration Rate Estimates Under Selection.
Open Access CRIS of the University of Bern·2026Open Access
Viral Simulation Reveals Overestimation Bias in Within-Host Phylodynamic Migration Rate Estimates Under Selection
Molecular Biology and Evolution·2026Open Access
Cross-scale effect of microbiota dynamics on resistance
2025Open Access
<scp>orcAI</scp> : A Machine Learning Tool to Detect and Classify Acoustic Signals of Killer Whales in Audio Recordings
Marine Mammal Science·2025Open Access
High-Throughput Quantification of Population Dynamics using Luminescence
2025Open Access
misosoup: A metabolic modeling tool for identifying minimal microbial communities reveals pervasive cross–feeding–driven niche expansion
2025Open Access
Parallel evolution of full-length genomes in a long-term evolution experiment with phage ϕX174
2025Open Access
Kinship clustering within an ecologically diverse killer whale metapopulation
Heredity·2025· 2 citedOpen Access
Viral Simulation Reveals Overestimation Bias in Within-Host Phylodynamic Migration Rate Estimates Under Selection
2025Open Access
Evolution of parasite transmission dispersion
Royal Society Open Science·2025Open Access
Author response: The effect of combining antibiotics on resistance: A systematic review and meta-analysis
2024Open Access
The effect of combining antibiotics on resistance: A systematic review and meta-analysis
eLife·2024· 3 citedOpen Access
The impact of treatment strategies on the epidemiological dynamics of plasmid-conferred antibiotic resistance
Proceedings of the National Academy of Sciences·2024· 4 citedOpen Access
Author response for "Evolution of parasite transmission dispersion"
2024
Assessing the Role of Bacterial Innate and Adaptive Immunity as Barriers to Conjugative Plasmids
Molecular Biology and Evolution·2024· 6 citedOpen Access
Author response for "Evolution of parasite transmission dispersion"
2024
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Frequent Co-authors

Martin A. Nowak(10), David D. Ho(6), Robert M. May(6), Roland R. Regoes(6), Arlene Hurley(5), Douglas F. Nixon(5), Thomas Pfeiffer(5), Roger D. Kouyos(5), Martin Markowitz(4), Xia Jin(3), Simon Monard(3), Yunzhen Cao(3), Andrew J. McMichael(3), M A Nowak(3), Tanja Stadler(3), Marc Lipsitch(3), James Μ. Binley(3), Gabriel M. Ortiz(3), Graham S. Ogg(2), Sarah Rowland‐Jones(2)