Nicola F. Müller

University of California, San Francisco — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

22h-index6.2kcitations58works7.82yr avg
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Research Topics

Genomics and Phylogenetic Studies(16), Influenza Virus Research Studies(15), COVID-19 epidemiological studies(15), Genetic diversity and population structure(11), SARS-CoV-2 and COVID-19 Research(9)

Publications58 total

Quantifying plasmid movement in drug-resistant Shigella species using phylodynamic inference
PLoS Pathogens·2025Open Access
MASCOT-Skyline integrates population and migration dynamics to enhance phylogeographic reconstructions
PLoS Computational Biology·2025· 3 citedOpen Access
Improving the Scalability of Bayesian Phylodynamic Inference through Efficient MCMC Proposals
2025· 1 citedOpen Access
Genomic Modeling of an Outbreak of Multidrug-Resistant <i>Shigella sonnei</i>, California, USA, 2023–2024
Emerging infectious diseases·2025Open Access
Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county
PLoS Pathogens·2024· 8 citedOpen Access
MASCOT-Skyline integrates population and migration dynamics to enhance phylogeographic reconstructions
2024· 2 citedOpen Access
Underdetected dispersal and extensive local transmission drove the 2022 mpox epidemic
Cell·2024· 51 citedOpen Access
Abstract IA016: Bayesian phylodynamics to quantify cancer growth across space and time
Cancer Research·2024
Application of phylodynamics to identify spread of antimicrobial-resistant Escherichia coli between humans and canines in an urban environment
The Science of The Total Environment·2024· 5 citedOpen Access
Early underdetected dissemination across countries followed by extensive local transmission propelled the 2022 mpox epidemic
2023· 2 citedOpen Access
Phylodynamics Uncovers the Transmission of Antibiotic-Resistant <i>Escherichia coli</i> between Canines and Humans in an Urban Environment
2023· 1 citedOpen Access
State-dependent evolutionary models reveal modes of solid tumour growth
Nature Ecology & Evolution·2023· 45 citedOpen Access
Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations
Virus Evolution·2023· 56 citedOpen Access
Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county
2022· 6 citedOpen Access
Quantifying plasmid movement in drug-resistant <i>Shigella</i> species using phylodynamic inference
2022· 1 citedOpen Access
State-dependent evolutionary models reveal modes of solid tumor growth
2022· 2 citedOpen Access
A Bayesian approach to infer recombination patterns in coronaviruses
Nature Communications·2022· 54 citedOpen Access
Impact and mitigation of sampling bias to determine viral spread: evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations
2022· 10 citedOpen Access
Phylodynamic analysis of the highly pathogenic avian influenza H5N8 epidemic in France, 2016–2017
Transboundary and Emerging Diseases·2022· 7 citedOpen Access
Joint Inference of Migration and Reassortment Patterns for Viruses with Segmented Genomes
Molecular Biology and Evolution·2021· 17 citedOpen Access
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Frequent Co-authors

Trevor Bedford(21), Tanja Stadler(17), Remco Bouckaert(10), Louise H. Moncla(8), Helen Y. Chu(8), Timothy G. Vaughan(7), David A. Rasmussen(7), Lea M. Starita(7), Chris Frazar(7), Melissa Truong(7), James Hadfield(7), Richard A. Neher(7), Jay Shendure(7), Alexei J. Drummond(6), Alexander L. Greninger(6), Pavitra Roychoudhury(6), Hong Xie(6), Jover Lee(6), Scott Lindquist(6), Michael Famulare(5)