Dénes Türei

European Bioinformatics Institute — United Kingdom

Biochemistry, Genetics and Molecular Biology · Life Sciences

22h-index4.3kcitations63works3.12yr avg
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Research Topics

Bioinformatics and Genomic Networks(23), Gene Regulatory Network Analysis(11), Gene expression and cancer classification(7), Single-cell and spatial transcriptomics(7), Microbial Metabolic Engineering and Bioproduction(6)

Publications63 total

Systematic analyses of lipid mobilization by human lipid transfer proteins
Nature·2026· 1 citedOpen Access
OmniPath: integrated knowledgebase for multi-omics analysis
Nucleic Acids Research·2025· 4 citedOpen Access
NeKo: A tool for automatic network construction from prior knowledge
PLoS Computational Biology·2025· 4 citedOpen Access
OmniPath: integrated knowledgebase for multi-omics analysis
2025Open Access
Integrated metabolomics data analysis to generate mechanistic hypotheses with MetaProViz
2025· 3 citedOpen Access
Dynamic multi-omics and mechanistic modeling approach uncovers novel mechanisms of kidney fibrosis progression
Molecular Systems Biology·2025· 2 citedOpen Access
Author Reply to Peer Reviews of Dynamic multi-omics and mechanistic modeling approach uncovers novel mechanisms of kidney fibrosis progression
2025
NetworkCommons: bridging data, knowledge, and methods to build and evaluate context-specific biological networks
Bioinformatics·2025· 3 citedOpen Access
NetworkCommons: bridging data, knowledge and methods to build and evaluate context-specific biological networks
2024· 2 citedOpen Access
Dynamic multi-omics and mechanistic modeling approach uncovers novel mechanisms of kidney fibrosis progression
2024Open Access
NeKo: a tool for automatic network construction from prior knowledge
2024· 6 citedOpen Access
Dynamic multi-omics and mechanistic modeling approach uncovers novel mechanisms of kidney fibrosis progression
2024
Modeling causal signal propagation in multi-omic factor space with COSMOS
2024· 7 citedOpen Access
MetalinksDB: a flexible and contextualizable resource of metabolite-protein interactions
Briefings in Bioinformatics·2024· 15 citedOpen Access
#894 Dynamic multi-omics and mechanistic modelling approach provides deeper insight into kidney fibrosis progression
Nephrology Dialysis Transplantation·2024Open Access
MetalinksDB: a flexible and contextualizable resource of metabolite-protein interactions
2023· 1 citedOpen Access
A system-wide analysis of lipid transfer proteins delineates lipid mobility in human cells
2023· 4 citedOpen Access
Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities
Nucleic Acids Research·2023· 269 citedOpen Access
AutophagyNet: high-resolution data source for the analysis of autophagy and its regulation
Autophagy·2023· 5 citedOpen Access
Democratizing knowledge representation with BioCypher
Nature Biotechnology·2023· 61 citedOpen Access
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Frequent Co-authors

Julio Sáez-Rodríguez(33), Tamás Korcsmáros(17), Dezső Módos(13), Katalin Lenti(9), Dávid Fazekas(8), Péter Csermely(8), Alberto Valdeolivas(7), Aurélien Dugourd(7), Tibor Vellai(7), László Földvári-Nagy(7), Balázs Bohár(7), Daniel Dimitrov(6), Márton Ölbei(6), Lejla Gul(5), Olga Ivanova(5), Sophia Müller‐Dott(5), Márcio Luís Acencio(5), Benjamin M. Gyori(5), Pablo Porras(5), Luana Licata(5)