Daniel Dimitrov

Biochemistry, Genetics and Molecular Biology · Life Sciences

15h-index2.8kcitations69works19.82yr avg
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Research Topics

Single-cell and spatial transcriptomics(26), Gene Regulatory Network Analysis(9), Radiomics and Machine Learning in Medical Imaging(8), Cell Image Analysis Techniques(8), Bioinformatics and Genomic Networks(5)

Publications69 total

Interpretation, extrapolation and perturbation of single cells
Nature Reviews Genetics·2026
OmniPath: integrated knowledgebase for multi-omics analysis
Nucleic Acids Research·2025· 4 citedOpen Access
OmniPath: integrated knowledgebase for multi-omics analysis
2025Open Access
Defining and benchmarking open problems in single-cell analysis
Nature Biotechnology·2025· 17 citedOpen Access
RIDDEN: Data-driven inference of receptor activity from transcriptomic data
PLoS Computational Biology·2025· 3 citedOpen Access
Unveiling the role of sex in the metabolism of indoxyl sulfate and apixaban
Scientific Reports·2025· 4 citedOpen Access
RIDDEN: Data-driven inference of receptor activity from transcriptomic data
2024· 1 citedOpen Access
Single-cell integration reveals metaplasia in inflammatory gut diseases
Nature·2024· 57 citedOpen Access
Unraveling the influence of Indoxyl Sulfate and apixaban in drug metabolism and elimination: Is sex a major player?
2024Open Access
LIANA+ provides an all-in-one framework for cell–cell communication inference
Nature Cell Biology·2024· 149 citedOpen Access
VIB Hackathon on spatial omics tools and methods
2024Open Access
LIANA+_Integrating_MultiOmics_Data v1
2024· 1 citedOpen Access
MetalinksDB: a flexible and contextualizable resource of metabolite-protein interactions
Briefings in Bioinformatics·2024· 15 citedOpen Access
Defining and benchmarking open problems in single-cell analysis
2024· 16 citedOpen Access
Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples
Cell Reports Methods·2024· 19 citedOpen Access
Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune system
Nature Immunology·2024· 44 cited
Clarifying the murk: unveiling bacterial dynamics in response to crude oil pollution, Corexit-dispersant, and natural sunlight in the Gulf of Mexico
Frontiers in Marine Science·2024· 6 citedOpen Access
MetalinksDB: a flexible and contextualizable resource of metabolite-protein interactions
2023· 1 citedOpen Access
Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease
eLife·2023· 41 citedOpen Access
Author response: Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease
2023Open Access
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Frequent Co-authors

Julio Sáez-Rodríguez(26), Aurélien Dugourd(11), Ricardo O. Ramirez Flores(10), Dénes Türei(7), Fabian J. Theis(5), Bence Szalai(5), Alberto Valdeolivas(5), Sebastian Lobentanzer(5), Pau Badia-i-Mompel(4), Emma Dann(4), Sophia Müller‐Dott(4), Philipp Schäfer(4), Elias Farr(4), Jan D. Lanzer(4), Britta Velten(4), Michal Klein(4), Christina Schmidt(4), Luke Zappia(3), Daniel Strobl(3), Giovanni Palla(3)