Alexander Churkin

Sami Shamoon College of Engineering — Israel

Biochemistry, Genetics and Molecular Biology · Life Sciences

12h-index447citations54works0.62yr avg
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Research Topics

RNA and protein synthesis mechanisms(24), RNA modifications and cancer(19), Hepatitis C virus research(14), RNA Research and Splicing(13), Hepatitis B Virus Studies(9)

Publications54 total

High dimensional tissue specific regulatory codes embedded in viral coding regions
2025Open Access
The bioinformatics of the finding that the hepatitis delta virus RNA editing mechanism by a conformational switch exists in genotype 7 in addition to genotype 3
Briefings in Bioinformatics·2025Open Access
Over time analysis of the codon usage of SARS-CoV-2 and its variants
Computational and Structural Biotechnology Journal·2025· 2 citedOpen Access
RNA Design Using incaRNAfbinv Demonstrated with the Identification of Functional RNA Motifs in Hepatitis Delta Virus
Methods in molecular biology·2024· 1 cited
Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans
Lecture notes in computer science·2024
The strain gap in a system of weakly and strongly interacting two-level systems
The European Physical Journal Special Topics·2023· 4 citedOpen Access
Advances in parameter estimation for mathematical models of hepatitis C viral kinetics
AIP conference proceedings·2023
Mathematical and Computational Biology of Viruses at the Molecular or Cellular Levels
Mathematics·2022Open Access
Modeling the Interplay between HDV and HBV in Chronic HDV/HBV Patients
Mathematics·2022· 5 citedOpen Access
IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutations
BMC Bioinformatics·2022Open Access
Advances in Parameter Estimation and Learning from Data for Mathematical Models of Hepatitis C Viral Kinetics
Mathematics·2022· 4 citedOpen Access
A Mathematical Model for Early HBV and -HDV Kinetics during Anti-HDV Treatment
Mathematics·2021· 3 citedOpen Access
Machine learning for mathematical models of HCV kinetics during antiviral therapy
Mathematical Biosciences·2021· 11 citedOpen Access
A Mathematical Analysis of HDV Genotypes: From Molecules to Cells
Mathematics·2021· 7 citedOpen Access
A Mathematical Analysis of RNA Structural Motifs in Viruses
Mathematics·2021· 7 citedOpen Access
Anomalous low-energy properties in amorphous solids and the interplay of electric and elastic interactions of tunneling two-level systems
Physical review. B./Physical review. B·2021· 5 citedOpen Access
HHD_v0
2020Open Access
HHD_v0_2
2020Open Access
HHD_v0_2
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
Efficient Methods for Parameter Estimation of Ordinary and Partial Differential Equation Models of Viral Hepatitis Kinetics
Mathematics·2020· 3 citedOpen Access
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Frequent Co-authors

Danny Barash(39), Harel Dahari(14), Vladimir Reinharz(10), Rami Zakh(7), Ohad Etzion(6), Scott J. Cotler(5), Marina Parr(5), Tamir Tuller(5), Franziska Totzeck(4), Dmitrij Frishman(4), S. Truszkowski(4), Moshe Schechter(3), Stephanie M. Lewkiewicz(3), А. Г. Шостенко(3), Matan Drory Retwitzer(2), Yann Ponty(2), Jérôme Waldispühl(2), Assaf Avihoo(2), Abdel Aouacheria(2), Vincent Navratil(2)