Karla E. Hirokawa

Allen Institute for Brain Science — United States

Neuroscience · Life Sciences

25h-index11.5kcitations44works4.02yr avg
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Research Topics

Neural dynamics and brain function(20), Cell Image Analysis Techniques(14), Single-cell and spatial transcriptomics(13), Neuroscience and Neuropharmacology Research(10), Neuroinflammation and Neurodegeneration Mechanisms(9)

Publications43 total

A Comprehensive Atlas of Cell Type Density Patterns and Their Role in Brain Organization
2024· 4 citedOpen Access
Connecting single-cell transcriptomes to projectomes in mouse visual cortex
2023· 13 citedOpen Access
Modeling the cell-type specific mesoscale murine connectome with anterograde tracing experiments
2023· 1 citedOpen Access
Regional and cell-type-specific afferent and efferent projections of the mouse claustrum
Cell Reports·2023· 57 citedOpen Access
Modeling the cell-type-specific mesoscale murine connectome with anterograde tracing experiments
Network Neuroscience·2023· 4 citedOpen Access
A whole-brain monosynaptic input connectome to neuron classes in mouse visual cortex
Nature Neuroscience·2022· 74 citedOpen Access
Regional and cell type-specific afferent and efferent projections of the mouse claustrum
2022· 13 citedOpen Access
A whole-brain monosynaptic input connectome to neuron classes in mouse visual cortex
2021· 9 citedOpen Access
Morphological diversity of single neurons in molecularly defined cell types
Nature·2021· 399 citedOpen Access
Cellular anatomy of the mouse primary motor cortex
Nature·2021· 266 citedOpen Access
A whole-brain monosynaptic input connectome to neuron classes in mouse visual cortex
2021· 4 citedOpen Access
Regional, Layer, and Cell-Type-Specific Connectivity of the Mouse Default Mode Network
Neuron·2020· 151 citedOpen Access
Brain-wide single neuron reconstruction reveals morphological diversity in molecularly defined striatal, thalamic, cortical and claustral neuron types
2020· 19 citedOpen Access
Cellular Anatomy of the Mouse Primary Motor Cortex
2020· 46 citedOpen Access
Regional, layer, and cell-class specific connectivity of the mouse default mode network
2020· 7 citedOpen Access
The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas
Cell·2020· 1.4k citedOpen Access
Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis
Cell Reports·2020· 80 citedOpen Access
Distinct transcriptomic cell types and neural circuits of the subiculum and prosubiculum along the dorsal-ventral axis
2019· 8 citedOpen Access
Hierarchical organization of cortical and thalamic connectivity
Nature·2019· 812 citedOpen Access
Brain-wide single neuron reconstruction reveals morphological diversity in molecularly defined striatal, thalamic, cortical and claustral neuron types
2019· 48 citedOpen Access
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Frequent Co-authors

Julie A. Harris(34), Hongkui Zeng(32), Lydia Ng(18), Quanxin Wang(18), Christof Koch(16), Bosiljka Tasic(16), Wayne Wakeman(15), Tanya L. Daigle(14), Thuc Nghi Nguyen(12), Michael Hawrylycz(12), Amy Bernard(12), Peter A. Groblewski(12), Maitham Naeemi(12), Ştefan Mihalaş(11), Staci A. Sorensen(11), Zizhen Yao(11), Kimberly A. Smith(11), Susan M. Sunkin(11), Leonard Kuan(10), Marty Mortrud(10)