Hongkui Zeng

Allen Institute for Brain Science — United States

Neuroscience · Life Sciences

94h-index53.8kcitations373works7.22yr avg
OpenAlex↗ORCID↗Google Scholar↗Lab page↗

Accepting Students?

No reports yet. Know if this professor is taking students?

Research Topics

Neural dynamics and brain function(126), Single-cell and spatial transcriptomics(117), Cell Image Analysis Techniques(86), Neuroinflammation and Neurodegeneration Mechanisms(72), Neuroscience and Neuropharmacology Research(70)

Publications362 total

Cross-species consensus atlas of the primate basal ganglia
2025· 5 citedOpen Access
Psilocybin triggers an activity-dependent rewiring of large-scale cortical networks
Cell·2025· 6 citedOpen Access
Spatial patterning of transcriptional and regulatory programs in the primate subcortex
2025Open Access
A cross-species spatial transcriptomic atlas of the human and non-human primate basal ganglia
2025· 7 citedOpen Access
Roadmap for direct and indirect translation of optogenetics into discoveries and therapies for humans
Nature Neuroscience·2025· 1 citedOpen Access
Integrative Transcriptome and Machine Learning Analysis Uncovers Critical STAT3/GREM2 Signaling Mechanisms in Dexamethasone Treatment of Hashimoto’s Thyroiditis
ACS Omega·2025Open Access
The new frontier in understanding human and mammalian brain development
Nature·2025· 2 cited
Continuous cell-type diversification in mouse visual cortex development
Nature·2025· 8 citedOpen Access
Transcriptomic and spatial organization of telencephalic GABAergic neurons
Nature·2025· 8 citedOpen Access
epDevAtlas: mapping GABAergic cells and microglia in the early postnatal mouse brain
Nature Communications·2025· 2 citedOpen Access
Large-scale cellular-resolution read/write of activity enables discovery of cell types defined by complex circuit properties
2025Open Access
MerQuaCo: a computational tool for quality control in image-based spatial transcriptomics
2025Open Access
Enhancer-AAVs allow genetic access to oligodendrocytes and diverse populations of astrocytes across species
2025· 1 citedOpen Access
Enhancer-AAVs allow genetic access to oligodendrocytes and diverse populations of astrocytes across species
2025Open Access
Data-driven fine-grained region discovery in the mouse brain with transformers
Nature Communications·2025· 3 citedOpen Access
Exploring the correspondence between gene expression and thalamic nuclei using the THALMANAC resource
2025Open Access
The xIV-LDDMM toolkit of image-varifold based technologies for mapping 3D images and spatial-omics across scales
Communications Biology·2025Open Access
Imaging high-frequency voltage dynamics in multiple neuron classes of behaving mammals
Cell·2025Open Access
Psilocybin triggers an activity-dependent rewiring of large-scale cortical networks
2025Open Access
Imaging high-frequency voltage dynamics in multiple neuron classes of behaving mammals
Cell·2025· 5 citedOpen Access
page 1 of 19Next →

Frequent Co-authors

Bosiljka Tasic(17), Thuc Nghi Nguyen(16), Michael Hawrylycz(15), Zizhen Yao(15), Kimberly A. Smith(15), Susan M. Sunkin(14), Lydia Ng(14), Christof Koch(14), Amy Bernard(14), Linda Madisen(12), Ed S. Lein(12), Julie A. Harris(12), David Feng(10), John W. Phillips(10), Nick Dee(10), Wayne Wakeman(9), Karla E. Hirokawa(9), Jeff Goldy(9), Tamara Casper(9), Staci A. Sorensen(8)