Marc Vaisset

Centre National de la Recherche Scientifique — France

Biochemistry, Genetics and Molecular Biology · Life Sciences

11h-index509citations28works0.02yr avg
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Research Topics

Protein Structure and Dynamics(17), Enzyme Structure and Function(9), RNA and protein synthesis mechanisms(7), Robotic Path Planning Algorithms(4), Mass Spectrometry Techniques and Applications(3)

Publications28 total

MoMA-LoopSampler: a web server to exhaustively sample protein loop conformations
Bioinformatics·2021· 12 citedOpen Access
Protein loops with multiple meta‐stable conformations: A challenge for sampling and scoring methods
Proteins Structure Function and Bioinformatics·2020· 8 citedOpen Access
Author response for "Protein loops with multiple meta-stable conformations: a challenge for sampling and scoring methods"
2020Open Access
Predicting Secondary Structure Propensities in IDPs Using Simple Statistics from Three-Residue Fragments
Journal of Molecular Biology·2020· 15 citedOpen Access
Author response for "Protein loops with multiple meta-stable conformations: a challenge for sampling and scoring methods"
2020
Combining System Design and Path Planning
Springer proceedings in advanced robotics·2020· 3 citedOpen Access
A reinforcement-learning-based approach to enhance exhaustive protein loop sampling
Bioinformatics·2019· 27 citedOpen Access
Realistic Ensemble Models of Intrinsically Disordered Proteins Using a Structure-Encoding Coil Database
Structure·2018· 68 citedOpen Access
Exhaustive Exploration of the Conformational Landscape of Small Cyclic Peptides Using a Robotics Approach
Journal of Chemical Information and Modeling·2018· 18 citedOpen Access
Simultaneous system design and path planning: A sampling-based algorithm
The International Journal of Robotics Research·2018· 11 citedOpen Access
Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules
Parallel Computing·2018· 11 citedOpen Access
Exhaustive exploration of the conformational landscape of small cyclic peptides using a robotics approach
2018Open Access
A full description of the conformational landscape of cyclized peptides using a robotics approach
Research in Computational Molecular Biology·2018
Segmenting Proteins into Tripeptides to Enhance Conformational Sampling with Monte Carlo Methods
Molecules·2018· 10 citedOpen Access
Combining System Design and Path Planning
HAL (Le Centre pour la Communication Scientifique Directe)·2016Open Access
A Reinforcement Learning Approach to Protein Loop Modeling
HAL (Le Centre pour la Communication Scientifique Directe)·2015Open Access
Characterizing Energy Landscapes of Peptides Using a Combination of Stochastic Algorithms
IEEE Transactions on NanoBioscience·2015· 26 cited
Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods
BMC Structural Biology·2013· 46 citedOpen Access
MoMA-LigPath: a web server to simulate protein–ligand unbinding
Nucleic Acids Research·2013· 46 citedOpen Access
A multi-tree approach to compute transition paths on energy landscapes
Open Archive Toulouse Archive Ouverte (University of Toulouse)·2013· 5 citedOpen Access
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Frequent Co-authors

Juan Cortés(21), Thierry Siméon(16), Kevin Molloy(7), Amélie Barozet(6), Ibrahim Al-Bluwi(4), Laurent Denarie(4), Marie Brut(4), Alain Estève(4), G. Landa(4), Guillaume Renvez(4), M. Djafari Rouhani(4), Alejandro Estaña(3), Nathalie Sibille(3), Pau Bernadó(3), Didier Devaurs(3), Christophe Zanon(3), Maud Jusot(3), Dirk Stratmann(3), Jacques Chomilier(3), Marc Bianciotto(3)