Nomi L. Harris

Lawrence Berkeley National Laboratory — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

39h-index25.9kcitations145works8.62yr avg
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Research Topics

Biomedical Text Mining and Ontologies(55), Genomics and Phylogenetic Studies(28), Bioinformatics and Genomic Networks(26), Semantic Web and Ontologies(22), Genomics and Rare Diseases(19)

Publications142 total

LinkML: An Open Data Modeling Framework
GigaScience·2025Open Access
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
UNC Libraries·2025Open Access
Toward AI-Ready Medical Imaging Data
arXiv (Cornell University)·2025Open Access
LinkML: An Open Data Modeling Framework
ArXiv.org·2025Open Access
Mondo: integrating disease terminology across communities
Genetics·2025· 5 citedOpen Access
BOSC 2025, the 26th Bioinformatics Open Source Conference
F1000Research·2025Open Access
KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response
UNC Libraries·2025Open Access
BioPortal: an open community resource for sharing, searching, and utilizing biomedical ontologies
Nucleic Acids Research·2025· 4 citedOpen Access
NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study
UNC Libraries·2025Open Access
Towards a standard benchmark for phenotype-driven variant and gene prioritisation algorithms: PhEval - Phenotypic inference Evaluation framework
BMC Bioinformatics·2025· 5 citedOpen Access
The Unified Phenotype Ontology : a framework for cross-species integrative phenomics
Genetics·2025· 7 citedOpen Access
A compendium of human gene functions derived from evolutionary modelling
Nature·2025· 26 citedOpen Access
Extracting Crucial Information from Lengthy Transcripts Using Text Summarisation
2025
A change language for ontologies and knowledge graphs
Database·2025· 5 citedOpen Access
Efficient reinterpretation of rare disease cases using Exomiser
npj Genomic Medicine·2024· 13 citedOpen Access
The Artificial Intelligence Ontology: LLM-Assisted Construction of AI Concept Hierarchies
Applied Ontology·2024· 9 citedOpen Access
CurateGPT: A flexible language-model assisted biocuration tool
arXiv (Cornell University)·2024· 3 citedOpen Access
AI-readiness for Biomedical Data: Bridge2AI Recommendations
2024· 18 citedOpen Access
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)
Journal of Biomedical Semantics·2024· 37 citedOpen Access
25 Years of BOSC, the Bioinformatics Open Source Conference
F1000Research·2024Open Access
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Frequent Co-authors

Chris Mungall(28), Melissa Haendel(21), Peter N. Robinson(15), Nicolas Matentzoglu(12), James P. Balhoff(11), Julie A. McMurry(11), Mónica Muñoz-Torres(11), Nicole Vasilevsky(10), David Osumi-Sutherland(10), Seth Carbon(9), Marcin P. Joachimiak(9), Justin Reese(9), Deepak Unni(8), Suzanna Lewis(8), Tiffany J. Callahan(7), Damian Smedley(7), Lauren Chan(7), J. Michael Cherry(6), Sierra Moxon(6), Sima Misra(6)