J. Michael Cherry

Stanford University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

68h-index98.9kcitations197works42.52yr avg
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Research Topics

Bioinformatics and Genomic Networks(60), Fungal and yeast genetics research(37), Biomedical Text Mining and Ontologies(37), Genomics and Phylogenetic Studies(36), Gene expression and cancer classification(28)

Publications186 total

The IGVF catalog—from genetic variation to function
Nucleic Acids Research·2025· 3 citedOpen Access
Data navigation on the ENCODE portal
Nature Communications·2025· 12 citedOpen Access
Integrative chromatin state annotation of 234 human ENCODE4 cell types using Segway
Genome Research·2025Open Access
Gene spatial integration: enhancing spatial transcriptomics analysis via deep learning and batch effect mitigation
Bioinformatics·2025· 2 citedOpen Access
A compendium of human gene functions derived from evolutionary modelling
Nature·2025· 26 citedOpen Access
CZ CELLxGENE Discover: a single-cell data platform for scalable exploration, analysis and modeling of aggregated data
Nucleic Acids Research·2024· 239 citedOpen Access
<i>Saccharomyces</i> Genome Database: advances in genome annotation, expanded biochemical pathways, and other key enhancements
Genetics·2024· 53 citedOpen Access
<i>Saccharomyces</i> Genome Database: Advances in Genome Annotation, Expanded Biochemical Pathways, and Other Key Enhancements
2024· 6 citedOpen Access
Updates to the Alliance of Genome Resources central infrastructure
Genetics·2024· 54 citedOpen Access
Updates to the Alliance of Genome Resources Central Infrastructure Alliance of Genome Resources Consortium
2023· 3 citedOpen Access
CZ CELL×GENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data
2023· 123 citedOpen Access
Integrative chromatin state annotation of 234 human ENCODE4 cell types using Segway reveals disease drivers
2023· 3 citedOpen Access
The ENCODE Uniform Analysis Pipelines
2023· 38 citedOpen Access
Data navigation on the ENCODE Portal
2023· 11 citedOpen Access
Data navigation on the ENCODE portal
arXiv (Cornell University)·2023· 8 citedOpen Access
Annotating and prioritizing human non-coding variants with RegulomeDB v.2
Nature Genetics·2023· 147 citedOpen Access
The ENCODE Uniform Analysis Pipelines
2023· 88 citedOpen Access
The Gene Ontology knowledgebase in 2023
Genetics·2023· 2.5k citedOpen Access
The EN-TEx resource of multi-tissue personal epigenomes &amp; variant-impact models
Cell·2023· 76 citedOpen Access
Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources
Genetics·2023· 133 citedOpen Access
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Frequent Co-authors

Stacia R. Engel(14), Shuai Weng(14), David Botstein(12), Selina S. Dwight(11), Robert S Nash(11), Stuart R. Miyasato(11), Rama Balakrishnan(10), Karen Christie(10), Kalpana Karra(10), Judith A. Blake(9), Eurie L. Hong(9), Marek S. Skrzypek(9), Edith D. Wong(9), Kara Dolinski(8), Midori A. Harris(8), Benjamin C. Hitz(8), David P. Hill(7), Chris Mungall(7), Suzi Aleksander(7), Michael Ashburner(6)