Rob Knight

Scripps Institution of Oceanography — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

252h-index443.6kcitations1.8kworks8.52yr avg
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Research Topics

Gut microbiota and health(782), Genomics and Phylogenetic Studies(222), Diet and metabolism studies(214), Microbial Community Ecology and Physiology(211), Metabolomics and Mass Spectrometry Studies(176)

Publications1.7k total

Genetic architecture and mechanisms of host-microbiome interactions from a multi-cohort analysis of outbred laboratory rats
Nature Communications·2025Open Access
Environmental and skin–nasal microbiome variation in South African children with atopic dermatitis
BMC Microbiology·2025Open Access
Value of Multiomics Over Clinical Risk Factors in Hypertension Prediction
Hypertension·2025Open Access
Scikit-bio: a fundamental Python library for biological omic data analysis
Nature Methods·2025· 2 cited
A resource to empirically establish drug exposure records directly from untargeted metabolomics data
Nature Communications·2025· 3 citedOpen Access
Supplementary Table 7 from Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods
2025Open Access
Supplementary Table 8 from Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods
2025Open Access
Supplementary Table 5 from Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods
2025Open Access
Supplementary Table 3 from Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods
2025Open Access
Supplementary Table 4 from Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods
2025Open Access
Supplementary Table 1 from Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods
2025Open Access
Data from Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods
2025Open Access
Environmental and maternal imprints on infant gut metabolic development
Cell Host & Microbe·2025· 2 citedOpen Access
Supplementary Table 6 from Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods
2025Open Access
Supplementary Table 2 from Stability of the Fecal and Oral Microbiome over 2 Years at −80°C for Multiple Collection Methods
2025Open Access
Antimicrobial resistance is widespread among intestinal and extra-intestinal <i>Bacteroides fragilis</i> strains
Infection and Immunity·2025Open Access
Calculating fast differential genome coverages among metagenomic sources using micov
Communications Biology·2025· 3 citedOpen Access
Personalised whole-body modelling links gut microbiota to metabolic perturbations in Alzheimer’s disease
2025Open Access
Environmental and skin–nasal microbiome variation in South African children with atopic dermatitis
2025Open Access
Bladder health and the urogenital microbiome in community-dwelling adult females
mSystems·2025Open Access
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Frequent Co-authors

Jeffrey I. Gordon(14), J. Gregory Caporaso(13), Catherine Lozupone(13), Noah Fierer(10), Ruth E. Ley(10), José C. Clemente(9), Dan Knights(8), Daniel McDonald(7), Peter J. Turnbaugh(7), Micah Hamady(7), Antonio González(7), Jesse Zaneveld(6), Jack A. Gilbert(5), Janet Jansson(5), Justin Kuczynski(4), Jesse Stombaugh(4), Kyle Bittinger(4), Frederic D. Bushman(4), Julia K. Goodrich(4), Curtis Huttenhower(4)