Marnix H. Medema

Leiden University — Netherlands

Medicine · Health Sciences

75h-index36.9kcitations302works15.72yr avg
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Research Topics

Microbial Natural Products and Biosynthesis(146), Genomics and Phylogenetic Studies(89), Microbial Metabolic Engineering and Bioproduction(79), Plant biochemistry and biosynthesis(52), Bioinformatics and Genomic Networks(43)

Publications300 total

Paired-omics-based exploration and characterization of biosynthetic diversity in lichenized fungi
Microbial Genomics·2025Open Access
Using cross-species co-expression to predict metabolic interactions in microbiomes
mSystems·2025Open Access
Substrate utilization and cross-feeding synergistically determine microbiome resistance to pathogen invasion
Nature Ecology & Evolution·2025Open Access
The antiSMASH database version 5
Nucleic Acids Research·2025· 1 citedOpen Access
Strategies for community-sourced biocuration in bioinformatics: a case study on MIBiG 4.0
Briefings in Bioinformatics·2025· 1 citedOpen Access
gutSMASH 2.0: Extended Identification of Primary Metabolic Gene Clusters From the Human Gut Microbiota
Journal of Molecular Biology·2025Open Access
Automated genome mining predicts structural diversity and taxonomic distribution of peptide metallophores across bacteria
2025Open Access
Automated genome mining predicts structural diversity and taxonomic distribution of peptide metallophores across bacteria
2025· 1 citedOpen Access
plantiSMASH 2.0: improvements to detection, annotation, and prioritization of plant biosynthetic gene clusters
2025· 1 citedOpen Access
Charting the biosynthetic landscape of hybrid polyketide-nonribosomal peptide-specialized lipids
2025Open Access
Predicting rhizosphere-competence-related catabolic gene clusters in plant-associated bacteria with rhizoSMASH
Nature Communications·2025· 4 citedOpen Access
Using cross-species co-expression to predict metabolic interactions in microbiomes
2025Open Access
MITE: the Minimum Information about a Tailoring Enzyme database for capturing specialized metabolite biosynthesis
Nucleic Acids Research·2025· 4 citedOpen Access
BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters
2025· 4 citedOpen Access
MITE: the Minimum Information about a Tailoring Enzyme database for capturing specialized metabolite biosynthesis
2025Open Access
Automated genome mining predicts structural diversity and taxonomic distribution of peptide metallophores across bacteria
2025· 1 citedOpen Access
MEANtools integrates multi-omics data to identify metabolites and predict biosynthetic pathways
PLoS Biology·2025· 4 citedOpen Access
Diverse rhizospheric <i>Bacillus</i> are required for protection against a leaf pathogen
The ISME Journal·2025· 3 citedOpen Access
Genome mining based on transcriptional regulatory networks uncovers a novel locus involved in desferrioxamine biosynthesis
PLoS Biology·2025· 6 citedOpen Access
antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation
Nucleic Acids Research·2025· 265 citedOpen Access
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Frequent Co-authors

Kai Blin(20), Tilmann Weber(18), Eriko Takano(11), Satria A. Kautsar(10), Michael A. Fischbach(8), Rainer Breitling(8), Justin J. J. van der Hooft(8), Simon J. Shaw(7), Barbara R. Terlouw(7), Gilles P. van Wezel(6), Nadine Ziemert(5), Sang Yup Lee(5), Mohammad Alanjary(5), Eric J. N. Helfrich(5), Hyun Uk Kim(5), Roger G. Linington(5), Pieter C. Dorrestein(5), Hannah E. Augustijn(4), Friederike Biermann(4), Rolf Müller(4)