Joseph D. Yesselman

University of Nebraska–Lincoln — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

19h-index1.6kcitations62works5.92yr avg
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Research Topics

RNA and protein synthesis mechanisms(42), RNA modifications and cancer(25), RNA Research and Splicing(22), Protein Structure and Dynamics(7), DNA and Nucleic Acid Chemistry(6)

Publications62 total

Self-Assembling RNA Nanostructures are Highly Sensitive to Environmental Conditions
Journal of Molecular Biology·2025Open Access
Quantitative Thermodynamic Characterization of Self-Assembling RNA Nanostructures
2025Open Access
Analysis of natural structures and chemical mapping data reveals local stability compensation in RNA
Nucleic Acids Research·2025· 5 citedOpen Access
Analysis of natural structures and chemical mapping data reveals local stability compensation in RNA
2024Open Access
RNA-Puzzles Round V: blind predictions of 23 RNA structures
Nature Methods·2024· 51 citedOpen Access
Characterizing 3D RNA structural features from DMS reactivity
2024· 4 citedOpen Access
High-throughput determination of RNA tertiary contact thermodynamics by quantitative DMS chemical mapping
Nucleic Acids Research·2024· 6 citedOpen Access
Simulated LC–MS Data Set for Assessing the Metabolomics Data Processing Pipeline Implemented into MVAPACK
Analytical Chemistry·2024· 2 citedOpen Access
High-throughput determination of RNA tertiary contact thermodynamics by quantitative DMS chemical mapping
2024· 1 citedOpen Access
High-throughput determination of RNA tertiary contact thermodynamics by quantitative DMS chemical mapping
Biophysical Journal·2024Open Access
Steps toward a predictive model of RNA tertiary contact formation
Biophysical Journal·2024Open Access
Extracting 3D RNA structural information from dimethyl sulfate (DMS) chemical mapping using deep learning
Biophysical Journal·2024· 2 citedOpen Access
Visualizing a two-state conformational ensemble in stem–loop 3 of the transcriptional regulator 7SK RNA
Nucleic Acids Research·2023· 9 citedOpen Access
Visualizing a two-state conformational ensemble in stem-loop 3 of the transcriptional regulator 7SK RNA
2023Open Access
Automated 3D Design and Evaluation of RNA Nanostructures with RNAMake
Methods in molecular biology·2023
7SK RNA SL3 DMS-MaPseq DREEM processed data
Figshare·2023Open Access
7SK RNA SL3 DMS-MaPseq DREEM processed data
Figshare·2023Open Access
Building the RNAMake Gateway on PATh: a Student-Led Design Project
Practice and Experience in Advanced Research Computing·2022
Web-based platform for analysis of RNA folding from high throughput chemical probing data
Nucleic Acids Research·2022· 7 citedOpen Access
Chemical reversible crosslinking enables measurement of RNA 3D distances and alternative conformations in cells
Nature Communications·2022· 38 citedOpen Access
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Frequent Co-authors

Rhiju Das(21), Wipapat Kladwang(12), Andrew M. Watkins(9), Ramya Rangan(8), Wah Chiu(8), Daniel Herschlag(8), Bret Lange(8), Kalli Kappel(7), Grigore Pintilie(7), Ved V. Topkar(7), Ivan N. Zheludev(7), Zhen Su(5), Charles L. Brooks(4), Scott Horowitz(4), Hashim M. Al‐Hashimi(4), Zhaoming Su(3), Clarence Yu Cheng(3), Siqi Tian(3), Raymond C. Trievel(3), Sarah K. Denny(3)