Nicholas D. Youngblut

Max Planck Institute for Developmental Biology — Germany

Biochemistry, Genetics and Molecular Biology · Life Sciences

25h-index3.5kcitations78works2.12yr avg
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Research Topics

Gut microbiota and health(35), Microbial Community Ecology and Physiology(32), Genomics and Phylogenetic Studies(25), Epigenetics and DNA Methylation(7), Metabolomics and Mass Spectrometry Studies(7)

Publications78 total

Infection with gut parasites correlates with gut microbiome diversity across human populations in Africa
Gut Microbes·2025Open Access
Human gut metagenomes and assembled microbial genomes from an urban cohort from Colombia, South America
2025Open Access
Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity
Proceedings of the AAAI Conference on Artificial Intelligence·2025· 1 citedOpen Access
Flagellin in the human gut microbiome is a diet-adjustable adjuvant for vaccination
2025· 1 citedOpen Access
Infection with gut parasites correlates with gut microbiome diversity across human populations in Africa
2025Open Access
Medication use is associated with distinct microbial features in anxiety and depression
Molecular Psychiatry·2025· 9 citedOpen Access
Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity
arXiv (Cornell University)·2024· 3 citedOpen Access
Medication Use is Associated with Distinct Microbial Features in Anxiety and Depression
2024· 3 citedOpen Access
An integrated systems biology approach reveals differences in formate metabolism in the genus Methanothermobacter
iScience·2023· 8 citedOpen Access
Obesity is the main driver of altered gut microbiome functions in the metabolically unhealthy
Gut Microbes·2023· 17 citedOpen Access
ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning
PLoS Computational Biology·2023· 10 citedOpen Access
Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5
Science Immunology·2023· 98 cited
An integrated systems-biology platform for power-to-gas technology
2022· 3 citedOpen Access
Interpreting tree ensemble machine learning models with endoR
PLoS Computational Biology·2022· 6 citedOpen Access
Tracing Carbon Metabolism with Stable Isotope Metabolomics Reveals the Legacy of Diverse Carbon Sources in Soil
Applied and Environmental Microbiology·2022· 15 citedOpen Access
Codiversification of gut microbiota with humans
Science·2022· 185 citedOpen Access
Bacterial community dynamics explain carbon mineralization and assimilation in soils of different land‐use history
Environmental Microbiology·2022· 18 citedOpen Access
ResMiCo: increasing the quality of metagenome-assembled genomes with deep learning
2022· 2 citedOpen Access
CAMI Skin Dataset for the Resmico model
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
CAMI Skin Dataset for the Resmico model
2022Open Access
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Frequent Co-authors

Ruth E. Ley(30), Jacobo de la Cuesta‐Zuluaga(12), Daniel H. Buckley(11), Rachel J. Whitaker(8), Samuel E. Barnett(8), Georg H. Reischer(6), Chris Walzer(6), Gabrielle Stalder(6), Andreas H. Farnleitner(6), Nathalie Schuster(4), Albane Ruaud(4), Jillian L. Waters(4), Silke Dauser(4), Jessica L. Sutter(3), Rob Knight(3), Timothy D. Spector(3), Victor T. Schmidt(3), Hagay Enav(3), Kelsey E. Huus(3), Zachariah M. Henseler(3)