Jed A. Fuhrman

University of Southern California — United States

Environmental Science · Physical Sciences

108h-index56.7kcitations378works5.02yr avg
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Research Topics

Microbial Community Ecology and Physiology(239), Genomics and Phylogenetic Studies(93), Bacteriophages and microbial interactions(93), Marine and coastal ecosystems(90), Protist diversity and phylogeny(40)

Publications378 total

Microbial Fingerprinting of Marine Water Masses in an Antarctic and Hydrographically Complex Area
2025Open Access
Author Correction: A roadmap for equitable reuse of public microbiome data
Nature Microbiology·2025Open Access
A roadmap for equitable reuse of public microbiome data
Nature Microbiology·2025· 8 citedOpen Access
Induced pathogenicity toward open-ocean diatoms by a newly isolated filterable bacterium <i>Ekhidna algicida</i> sp. nov.
2025· 1 citedOpen Access
The JEDI marker as a universal measure of planetary biodiversity
2025· 2 citedOpen Access
Characterizing organisms from three domains of life with universal primers from throughout the global ocean
Scientific Data·2025· 4 citedOpen Access
Functional biogeography of marine microbial heterotrophs
Science·2025· 11 cited
A Multidomain Lens on the Temporal Dynamics of Surface Microbial Communities in the Southern Ocean (2013–2019)
2025Open Access
Characterizing organisms from three domains of life with universal primers from throughout the global ocean
2025· 4 citedOpen Access
With a little help from my friends: importance of protist-protist interactions in structuring marine protistan communities in the San Pedro Channel
mSystems·2025· 4 citedOpen Access
Phylogenetic proximity is a key driver of temporal succession of marine giant viruses in a five-year metagenomic time-series
ISME Communications·2025Open Access
Quantitative metagenomics for marine prokaryotes and photosynthetic eukaryotes
ISME Communications·2025· 1 citedOpen Access
Variational inference for microbiome survey data with application to global ocean data
ISME Communications·2025Open Access
Phylogenetic proximity drives temporal succession of marine giant viruses in a five-year metagenomic time-series
2024· 3 citedOpen Access
Seasonal patterns of microbial diversity across the world oceans
Limnology and Oceanography Letters·2024· 22 citedOpen Access
DeepLINK-T: deep learning inference for time series data using knockoffs and LSTM
arXiv (Cornell University)·2024Open Access
DeepMicroClass sorts metagenomic contigs into prokaryotes, eukaryotes and viruses
NAR Genomics and Bioinformatics·2024· 20 citedOpen Access
Variational inference for microbiome survey data with application to global ocean data
2024Open Access
Functional biogeography of marine microbial heterotrophs
2024· 8 citedOpen Access
Amplicon sequencing with internal standards yields accurate picocyanobacteria cell abundances as validated with flow cytometry
ISME Communications·2024· 11 citedOpen Access
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Frequent Co-authors

Joshua A. Steele(7), Fengzhu Sun(7), Michael S. Schwalbach(7), Rob Knight(6), Jack A. Gilbert(5), Rachel T. Noble(5), Curtis A. Suttle(5), Ian Hewson(5), Jennifer B. H. Martiny(4), M. Claire Horner‐Devine(4), Janet Jansson(4), Mark V. Brown(4), David M. Needham(3), Jessica L. Green(3), Noah Fierer(3), J. Gregory Caporaso(3), Dawn Field(3), Jacob A. Cram(3), Xiaoling Zhang(3), Philip Hugenholtz(3)