David James Sherman

Université de Bordeaux — France

Biochemistry, Genetics and Molecular Biology · Life Sciences

26h-index4.9kcitations129works5.42yr avg
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Research Topics

Microbial Metabolic Engineering and Bioproduction(31), Fungal and yeast genetics research(26), Fermentation and Sensory Analysis(26), Yeasts and Rust Fungi Studies(20), Bioinformatics and Genomic Networks(19)

Publications129 total

Accurate MAG reconstruction from complex soil microbiome through combined short- and HiFi long-reads metagenomics
2025· 1 citedOpen Access
Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling 6 may 2025 / Modélisation du microbiome
SPIRE - Sciences Po Institutional REpository·2025Open Access
TANGO models: numerical multi-omics reconciliation of bacterial fermentation in cheese production
SPIRE - Sciences Po Institutional REpository·2024
Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling
Metabolic Engineering·2024· 7 citedOpen Access
Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing
Microbial Biotechnology·2024· 19 citedOpen Access
A digital twin of bacterial metabolism during cheese production
2023· 3 citedOpen Access
Metabolic networks paper CoCoMiCo
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Metabolic networks paper CoCoMiCo
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Reasoning approaches for the characterization of cooperation and competition in large-scale microbial communities
HAL (Le Centre pour la Communication Scientifique Directe)·2022
Metatranscriptomics and metabolic modeling to identify bacterial metabolic interactions during the manufacture of a model pressed cheese.
HAL (Le Centre pour la Communication Scientifique Directe)·2022
Dynamic Flux Balance Analysis with Metamodels
HAL (Le Centre pour la Communication Scientifique Directe)·2022Open Access
Characterising competition and cooperation potentials in microbial communities using discrete models of metabolism. An exploratory analysis
HAL (Le Centre pour la Communication Scientifique Directe)·2022Open Access
Métatranscriptomique et modèle métabolique pour identifier la succession des métabolismes bactériens en interaction lors de la fabrication d’un fromage modèle à pâte pressée.
HAL (Le Centre pour la Communication Scientifique Directe)·2022
Characterizing microbial interactions in controlled and natural microbial communities
INRIA a CCSD electronic archive server·2022Open Access
Modelling metabolic network dynamics in a cheese bacterial community
HAL (Le Centre pour la Communication Scientifique Directe)·2021Open Access
Metabolic modelling deciphers interactions in a cheese bacterial community
HAL (Le Centre pour la Communication Scientifique Directe)·2021
Two different Oenococcus oeni lineages are associated to either red or white wines in Burgundy: genomics and metabolomics insights
OENO One·2017· 30 citedOpen Access
Many interspecific chromosomal introgressions are highly prevalent in Holarctic <i>Saccharomyces uvarum</i> strains found in human‐related fermentations
Yeast·2017· 24 citedOpen Access
Genome Sequence of the Yeast Clavispora lusitaniae Type Strain CBS 6936
Genome Announcements·2017· 17 citedOpen Access
PD12-01 A NOVEL FAMILY OF NATURAL PRODUCTS THAT TARGETS UROPATHOGENIC <i>ESCHERISCHIA COLI</i> IRON ACQUISITION
The Journal of Urology·2017
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Frequent Co-authors

Pascal Durrens(14), Macha Nikolski(11), Cécile Neuvéglise(6), Henning Hermjakob(6), Bernard Dujon(5), Christian Marck(5), Sandra Orchard(5), Tiphaine Martin(5), Serge Casarégola(4), Emmanuel Talla(4), Valérie Barbe(4), Claudine Bleykasten(4), Antoine de Daruvar(4), Laurence Despons(4), Cécile Fairhead(4), Guy‐Franck Richard(4), Éric Westhof(4), Claude Gaillardin(4), Patrick Wincker(4), Gilles Fischer(3)