Karoline Faust

Rega Institute for Medical Research — Belgium

Biochemistry, Genetics and Molecular Biology · Life Sciences

42h-index31.1kcitations147works2.32yr avg
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Research Topics

Gut microbiota and health(63), Microbial Community Ecology and Physiology(43), Bioinformatics and Genomic Networks(40), Microbial Metabolic Engineering and Bioproduction(24), Genomics and Phylogenetic Studies(11)

Publications147 total

PlasticEnz: An integrated database and screening tool combining homology and machine learning to identify plastic-degrading enzymes in meta-omics datasets
PLoS Computational Biology·2026Open Access
Keystone concept revisited: insights into microbial community dynamics and control
Nature Reviews Microbiology·2026Open Access
Emergence of alternative states in a synthetic human gut microbial community
Nature Communications·2025· 1 citedOpen Access
Growth stage and interspecies interactions shape the cell biology and cell cycle characteristics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis
Communications Biology·2025Open Access
Differential recovery of chain-elongating bacteria: comparing droplet, plating, and dilution-to-extinction methods
mSystems·2025Open Access
PlasticEnz: An integrated database and screening tool combining homology and machine learning to identify plastic-degrading enzymes in meta-omics datasets
2025Open Access
μGrowthDB: querying, visualizing, and sharing microbial growth curve data
2025Open Access
microbetag: simplifying microbial network interpretation through annotation, enrichment tests, and metabolic complementarity analysis
Genome biology·2025Open Access
Exploring interactions in microbial communities
Current Opinion in Biotechnology·2025· 1 cited
What limits our ability to study the effects of microbial diversity on health and the environment?
Cell Systems·2025
A high-throughput and time-efficient Nanopore full-length 16S rRNA gene sequencing protocol for synthetic microbial communities
Methods·2025· 4 cited
Discovery of alternative stable states in a synthetic human gut microbial community
2025· 1 citedOpen Access
Droplet microfluidics for single-cell studies: a frontier in ecological understanding of microbiomes
FEMS Microbiology Reviews·2025· 5 citedOpen Access
Long-term behavior of Thermocaproicibacter and associated microbial community in open culture thermophilic acidogenic membrane reactors treating human waste and operated under stable continuous conditions
SSRN Electronic Journal·2025Open Access
Pollutant-degrading pathways in the gut microbiome of a stranded killer whale
Open Repository and Bibliography (University of Liège)·2025
Effects of microplastics on <i>Daphnia</i> -associated microbiomes in situ and in vitro
The ISME Journal·2024· 3 citedOpen Access
Discovery of alternative stable states in a synthetic human gut microbial community
2024· 3 citedOpen Access
How can concepts from ecology enable insights about cellular communities?
Cell Systems·2024· 1 citedOpen Access
microbetag: simplifying microbial network interpretation through annotation, enrichment tests and metabolic complementarity analysis
2024· 2 citedOpen Access
How can concepts from ecology enable insights about cellular communities?
Cell Systems·2024· 1 citedOpen Access
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Frequent Co-authors

Jeroen Raes(25), Gipsi Lima‐Mendez(7), Didier Gonze(7), Rob Knight(6), Curtis Huttenhower(5), Lisa Röttjers(5), Leo Lahti(5), Jacques van Helden(5), Dirk Gevers(4), Eric J. Alm(4), Gwen Falony(4), Sahar Abubucker(3), Jonathan H. Badger(3), Asif Chinwalla(3), Heather H. Creasy(3), Ashlee M. Earl(3), Michael G. FitzGerald(3), Robert S. Fulton(3), Michelle Giglio(3), Kymberlie Hallsworth-Pepin(3)