Kathleen Marchal

Ghent University — Belgium

Biochemistry, Genetics and Molecular Biology · Life Sciences

65h-index28.0kcitations433works5.42yr avg
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Research Topics

Bioinformatics and Genomic Networks(79), Gene expression and cancer classification(68), Genomics and Chromatin Dynamics(43), Gene Regulatory Network Analysis(41), Genomics and Phylogenetic Studies(40)

Publications383 total

Filtering for truth: high-precision taxonomic classification in nanopore shotgun metagenomics data through a KMA-based bioinformatic pipeline (KAPTAIN)
BMC Genomics·2026Open Access
Recovery and microbial host assignment of mobile genetic elements in complex microbiomes: insights from a spiked gut sample
mSystems·2026· 1 citedOpen Access
Supplementary Figures, Tables, Notes from Whole Slide Imaging-Based Prediction of <i>TP53</i> Mutations Identifies an Aggressive Disease Phenotype in Prostate Cancer
2025Open Access
Suppl. Data 1 from Whole Slide Imaging-Based Prediction of <i>TP53</i> Mutations Identifies an Aggressive Disease Phenotype in Prostate Cancer
2025Open Access
Suppl Data 2 from Whole Slide Imaging-Based Prediction of <i>TP53</i> Mutations Identifies an Aggressive Disease Phenotype in Prostate Cancer
2025Open Access
Detection of Bacillus production strains and contaminants in food enzyme products
Food Chemistry Molecular Sciences·2025· 1 citedOpen Access
Overcoming challenges in metagenomic AMR surveillance with nanopore sequencing: a case study on fluoroquinolone resistance
Frontiers in Microbiology·2025· 5 citedOpen Access
EPS inhibitor treatment of Salmonella impacts evolution without selecting for resistance to biofilm inhibition
npj Biofilms and Microbiomes·2025· 2 citedOpen Access
ELLIPSIS: robust quantification of splicing in scRNA-seq
Bioinformatics·2025· 1 citedOpen Access
Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches
Frontiers in Microbiology·2025· 1 citedOpen Access
Prior Knowledge Injection into Deep Learning Models Predicting Gene Expression from Whole Slide Images
arXiv (Cornell University)·2025Open Access
smartSim: simulation of splice aware single cell smart-seq3 data
Bioinformatics Advances·2024Open Access
Synthetic multimodal data modelling for data imputation
Nature Biomedical Engineering·2024· 3 cited
Digital profiling of gene expression from histology images with linearized attention
Nature Communications·2024· 38 citedOpen Access
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities
Scientific Data·2024· 19 citedOpen Access
Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling
Frontiers in Microbiology·2024· 16 citedOpen Access
Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance
Scientific Reports·2023· 16 citedOpen Access
Expression divergence of expansin genes drive the heteroblasty in Ceratopteris chingii
BMC Biology·2023· 5 citedOpen Access
Competitive interactions facilitate resistance development against antimicrobials
Applied and Environmental Microbiology·2023· 9 citedOpen Access
Digital profiling of cancer transcriptomes from histology images with grouped vision attention
2023· 6 citedOpen Access
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Frequent Co-authors

Jos Vanderleyden(11), Kristof Engelen(9), Bart De Moor(9), Sigrid C. J. De Keersmaecker(9), Yves Van de Peer(6), Gert Thijs(6), Yves Moreau(6), Jan Michiels(6), Magali Lescot(5), Stéphane Rombauts(5), Pierre Rouzé(5), Lars Feuerbach(5), Andrés Lanzós(5), Jakob Skou Pedersen(5), Sergio Pulido-Tamayo(5), Marta Paczkowska(4), Jonathan Barenboim(4), Samirkumar B. Amin(4), Gary D. Bader(4), Johanna Bertl(4)