Jakob Skou Pedersen

Aarhus University — Denmark

Biochemistry, Genetics and Molecular Biology · Life Sciences

67h-index40.2kcitations269works2.52yr avg
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Research Topics

Cancer Genomics and Diagnostics(60), Circular RNAs in diseases(55), Epigenetics and DNA Methylation(37), RNA Research and Splicing(37), Cancer-related molecular mechanisms research(35)

Publications211 total

Transferable cancer detection from cell-free DNA fragment lengths through extensions of non-negative matrix factorization
2025Open Access
<scp>LRP2</scp> Expression in Melanoma Is Associated With a Transitory Cell State, Increased T Cell Infiltration, and Is Upregulated by <scp>IFNy</scp> Signaling
Pigment Cell & Melanoma Research·2025Open Access
LRP2 expression in melanoma is associated with a transitory cell state, increased T cell infiltration, and is upregulated by IFNγ signaling
2025Open Access
Using high-dimensional immunophenotyping for mapping immune cell composition in rapid cryopreserved liquid biopsies
2025
Comprehensive genomic characterization of early-stage bladder cancer
Nature Genetics·2025· 19 citedOpen Access
bayesReact: Expression-coupled regulatory motif analysis detects microRNA activity in cancer and at the single cell level
2024· 1 citedOpen Access
circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
eLife·2024· 7 citedOpen Access
Author response: circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
2024· 1 citedOpen Access
circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
2024· 1 citedOpen Access
Author response: circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
2024Open Access
Reviewer #1 (Public Review): circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
2024Open Access
circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
2024Open Access
Reviewer #3 (Public Review): circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
2024Open Access
Author response: circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
2024Open Access
Reviewer #2 (Public Review): circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
2024Open Access
Exploring the tumor genomic landscape of aggressive prostate cancer by whole‐genome sequencing of tissue or liquid biopsies
International Journal of Cancer·2024· 7 citedOpen Access
Error-Corrected Deep Targeted Sequencing of Circulating Cell-Free DNA from Colorectal Cancer Patients for Sensitive Detection of Circulating Tumor DNA
International Journal of Molecular Sciences·2024· 12 citedOpen Access
Author Response: circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
2024Open Access
circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA
2024· 1 citedOpen Access
Abstract 3668: Plasma cell-free DNA profiling for deciphering cellular origins and immune competence in cancer patients
Cancer Research·2024
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Frequent Co-authors

Søren Vang(15), Lars Dyrskjøt(11), David Haussler(10), Iver Nordentoft(10), Morten Muhlig Nielsen(10), Torben F. Ørntoft(10), Henrik Hornshøj(9), Jakob Hedegaard(8), Malene Juul(8), Jan O. Korbel(7), Philippe Lamy(7), Claus L. Andersen(7), Johanna Bertl(7), Nuno A. Fonseca(7), Mark Gerstein(7), Gad Getz(7), Tobias Madsen(7), Adam Siepel(6), Karin Birkenkamp‐Demtröder(6), Mark P. Hamilton(6)