Mark Gerstein

Mount Sinai Hospital — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

195h-index272.5kcitations1.2kworks11.32yr avg
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Research Topics

Genomics and Phylogenetic Studies(196), Bioinformatics and Genomic Networks(169), RNA and protein synthesis mechanisms(165), Genomics and Chromatin Dynamics(153), Gene expression and cancer classification(121)

Publications1.1k total

The IGVF catalog—from genetic variation to function
Nucleic Acids Research·2025· 3 citedOpen Access
Machine-learning models based on histological images from healthy donors identify imageQTLs and predict chronological age
Proceedings of the National Academy of Sciences·2025Open Access
DNA shape and epigenomics distinguish the mechanistic origin of human genomic structural variations
Nucleic Acids Research·2025Open Access
Structural and transduction patterns of human-specific polymorphic SVA insertions
Mobile DNA·2025Open Access
Aerosol-based exposure to opportunistic pathogens originating from hospital sink drains
American Journal of Infection Control·2025· 2 cited
Disinfection of Hospital Sink Drains Enriches Pseudomonadota and Efflux Pump-Mediated Antibiotic Resistance in Reestablished Biofilms
2025Open Access
FAVOR 2.0: A reengineered functional annotation of variants online resource for interpreting genomic variation
Nucleic Acids Research·2025· 1 citedOpen Access
Epigenetic characterization of pseudogenes across human tissues
2025Open Access
Network-based drug repurposing for psychiatric disorders using single-cell genomics
Cell Genomics·2025· 2 citedOpen Access
DNA shape and epigenomics distinguish the mechanistic origin of human genomic structural variations
2025Open Access
Risks of AI scientists: prioritizing safeguarding over autonomy
Nature Communications·2025· 10 citedOpen Access
Regulatory genome annotation
Nature Reviews Genetics·2025· 1 cited
Efficient Privacy-Preserving Training of Quantum Neural Networks by Using Mixed States to Represent Input Data Ensembles
arXiv (Cornell University)·2025Open Access
Machine Learning Models Based on Histological Images from Healthy Donors Identify ImageQTLs and Predict Chronological Age
2025Open Access
Comprehensive analysis of pseudogene expression in human and macaque brains compared with other tissues
2025Open Access
Author Correction: Complex genetic variation in nearly complete human genomes
Nature·2025· 1 citedOpen Access
The chronODE framework for modelling multi-omic time series with ordinary differential equations and machine learning
Nature Communications·2025· 2 citedOpen Access
CellForge: Agentic Design of Virtual Cell Models
ArXiv.org·2025· 2 citedOpen Access
Recent advances and future prospects for blockchain in biomedicine
Cell Reports Methods·2025Open Access
Complex genetic variation in nearly complete human genomes
Nature·2025· 43 citedOpen Access
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Frequent Co-authors

M Snyder(19), Jan O. Korbel(9), Manolis Kellis(7), Kevin P. White(7), Joel Rozowsky(6), Roderic Guigó(6), Fábio C. P. Navarro(6), Paul Flicek(6), Gregory E. Crawford(6), Alexej Abyzov(6), Kai Ye(6), Andrew E. Jaffe(6), Tim Hubbard(5), B Wold(5), Timothy E. Reddy(5), Peggy Farnham(5), Tobias Rausch(5), Ken Chen(5), Ryan E. Mills(5), Charles Lee(5)