Levi N. Naden

Virginia Tech — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

10h-index477citations20works1.02yr avg
OpenAlex↗ORCID↗Google Scholar↗Lab page↗

Accepting Students?

No reports yet. Know if this professor is taking students?

Research Topics

Protein Structure and Dynamics(5), Machine Learning in Materials Science(5), Computational Drug Discovery Methods(4), RNA and protein synthesis mechanisms(3), RNA Research and Splicing(3)

Publications20 total

choderalab/openmmtools: 0.26.0 System Minimization Improvements
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
Cookiecutter for Computational Molecular Sciences: A Best Practices Ready Python Project Generator
Journal of Chemical Education·2024· 2 citedOpen Access
Quantum Chemistry Common Driver and Databases (QCDB) and Quantum Chemistry Engine (QCE<scp>ngine</scp>): Automation and interoperability among computational chemistry programs
The Journal of Chemical Physics·2021· 41 citedOpen Access
The <scp>MolSSI</scp> QCA <scp>rchive</scp> project: An open‐source platform to compute, organize, and share quantum chemistry data
Wiley Interdisciplinary Reviews Computational Molecular Science·2020· 88 citedOpen Access
The MolSSI QCArchive Project: An Open-Source Platform to Compute, Organize, and Share Quantum Chemistry Data
2020· 34 citedOpen Access
The MolSSI QCArchive Project: An Open-Source Platform to Compute, Organize, and Share Quantum Chemistry Data
2020· 12 citedOpen Access
choderalab/openmmtools: 0.19.0 - Multiple alchemical regions
Zenodo (CERN European Organization for Nuclear Research)·2019· 1 citedOpen Access
Small-molecule targeting of MUSASHI RNA-binding activity in acute myeloid leukemia
Nature Communications·2019· 144 citedOpen Access
BioExcel-2 Deliverable 2.1 – State of the Art and Initial Roadmap
arXiv (Cornell University)·2019· 1 citedOpen Access
Best Practices for Alchemical Free Energy Calculations [Article v1.0]
Living Journal of Computational Molecular Science·2019· 26 citedOpen Access
Small-Molecule Targeting of Musashi RNA-Binding Activity in Acute Myeloid Leukemia
Blood·2018· 1 cited
Small-molecule targeting of MUSASHI RNA-binding activity in acute myeloid leukemia
2018· 14 citedOpen Access
choderalab/yank: 0.19.4 - Schema and Parallel Setup Fixes
Zenodo (CERN European Organization for Nuclear Research)·2017Open Access
choderalab/pymbar: Fix PyPi Release
Zenodo (CERN European Organization for Nuclear Research)·2017· 4 citedOpen Access
choderalab/openmmtools: OpenMMTools 0.13.0
Zenodo (CERN European Organization for Nuclear Research)·2017· 4 citedOpen Access
Predicting Thermodynamic Properties over Combinatorially Large Chemical Spaces
Libra·2016· 1 citedOpen Access
Rapid Computation of Thermodynamic Properties over Multidimensional Nonbonded Parameter Spaces Using Adaptive Multistate Reweighting
Journal of Chemical Theory and Computation·2016· 21 citedOpen Access
Linear Basis Function Approach to Efficient Alchemical Free Energy Calculations. 2. Inserting and Deleting Particles with Coulombic Interactions
Journal of Chemical Theory and Computation·2015· 44 cited
Linear Basis Function Approach to Efficient Alchemical Free Energy Calculations. 1. Removal of Uncharged Atomic Sites
Journal of Chemical Theory and Computation·2014· 38 cited
Proton-implanted red photonic crystal VCSELs with high quality output beam
Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE·2010· 1 cited

Frequent Co-authors

John D. Chodera(10), Michael R. Shirts(5), Steven K. Albanese(4), Andrea Rizzi(4), Daniel G. A. Smith(4), Doaa Altarawy(4), Lori A. Burns(4), Matthew Welborn(4), Logan Ward(4), Sam Ellis(4), Kyle A. Beauchamp(4), Patrick Grinaway(4), Bas Rustenburg(4), Arthur Chow(3), Alexandra Schurer(3), Christina Z. Rotsides(3), James Taggart(3), Timothy Chou(3), Saroj Gourkanti(3), Daniel Cappel(3)