Camille Marchet

Centre National de la Recherche Scientifique — France

Biochemistry, Genetics and Molecular Biology · Life Sciences

15h-index1.2kcitations87works1.22yr avg
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Research Topics

Genomics and Phylogenetic Studies(43), Algorithms and Data Compression(23), RNA and protein synthesis mechanisms(16), Gene expression and cancer classification(10), Molecular Biology Techniques and Applications(10)

Publications87 total

Metappuccino: Large Language Model-driven Reconstruction of Sequence Read Archive Metadata for Cancer Research
2025Open Access
Making sense of massive genomic data by indexing at scale
2025Open Access
REINDEER2: Practical Abundance Index at Scale
Lecture notes in computer science·2025· 1 cited
Vizitig: a pangenome and pantranscriptome explorer
Zenodo (CERN European Organization for Nuclear Research)·2025Open Access
Vizitig: a pangenome and pantranscriptome explorer
Zenodo (CERN European Organization for Nuclear Research)·2025Open Access
<tt>CREMSA</tt>: compressed indexing of (ultra) large multiple sequence alignments
Bioinformatics·2025Open Access
REINDEER2: practical abundance index at scale
2025
Vizitig: a pangenome and pantranscriptome explorer
2025· 1 citedOpen Access
Cover Image, Volume 45, Issue 3
Cancer Communications·2025Open Access
Fractional hitting sets for efficient multiset sketching
Algorithms for Molecular Biology·2025· 3 citedOpen Access
A strong internal promoter drives massive expression of YEATS‐domain devoid <i>MLLT3</i> transcripts in HSC and most lethal AML
Cancer Communications·2025· 3 citedOpen Access
CREMSA: Compressed indexing of (ultra) large alignments
SPIRE - Sciences Po Institutional REpository·2025Open Access
Imbalance in minimizer-based partitions of k-mers: a theoretical approach
SPIRE - Sciences Po Institutional REpository·2024Open Access
Assessing Long-Read Mappers for Viral Genomics
2024Open Access
Strategies to update a compacted de Bruijn graph
SPIRE - Sciences Po Institutional REpository·2024Open Access
Compressed indexing of (ultra) large viral alignments
SPIRE - Sciences Po Institutional REpository·2024Open Access
Vizitig: A visual tool for colored de Bruijn graphs exploration
SPIRE - Sciences Po Institutional REpository·2024Open Access
Transipedia.org: k-mer-based exploration of large RNA sequencing datasets and application to cancer data
Genome biology·2024· 7 citedOpen Access
Advances in colored k-mer sets: essentials for the curious
arXiv (Cornell University)·2024· 1 citedOpen Access
Advancements in colored k-mer sets: essentials for the curious
SPIRE - Sciences Po Institutional REpository·2024· 1 citedOpen Access
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Frequent Co-authors

Antoine Limasset(19), Pierre Peterlongo(16), Rayan Chikhi(11), Mikaël Salson(8), Corinne Da Silva(8), Vincent Lacroix(7), Lolita Lecompte(7), Lucie Bittner(6), Gustavo Sacomoto(6), Daniel Gautheret(5), Bastien Cazaux(5), Leandro Lima(5), Jean‐Marc Aury(5), Igor Martayan(5), Claire Lemaitre(4), Marie-France Sagot(4), Pierre Morisse(4), Thierry Lecroq(4), Arnaud Lefebvre(4), Vincent Mièle(4)