Bastien Cazaux

Université de Lille — France

Computer Science · Physical Sciences

9h-index372citations57works2.02yr avg
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Research Topics

Algorithms and Data Compression(42), Genomics and Phylogenetic Studies(21), DNA and Biological Computing(13), Network Packet Processing and Optimization(9), RNA and protein synthesis mechanisms(8)

Publications57 total

Accelerating <i>k</i> -mer-based sequence filtering
2025· 1 citedOpen Access
Decomposing Words for Enhanced Compression: Exploring the Number of Runs in the Extended Burrows-Wheeler Transform
arXiv (Cornell University)·2025Open Access
K2R: Tinted de Bruijn graphs implementation for efficient read extraction from sequencing datasets
Bioinformatics Advances·2024· 1 citedOpen Access
OReO: optimizing read order for practical compression
Bioinformatics Advances·2024· 1 citedOpen Access
Conway–Bromage–Lyndon (CBL): an exact, dynamic representation of <i>k</i>-mer sets
Bioinformatics·2024· 6 citedOpen Access
K2R: Tinted de Bruijn Graphs implementation for efficient read extraction from sequencing datasets
2024· 2 citedOpen Access
Conway-Bromage-Lyndon (CBL): an exact, dynamic representation of <i>k</i> -mer sets
2024· 3 citedOpen Access
A survey of mapping algorithms in the long-reads era
Genome biology·2023· 52 citedOpen Access
dipwmsearch: a Python package for searching di-PWM motifs
Bioinformatics·2023· 2 citedOpen Access
HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets
Molecular Biology and Evolution·2023· 5 citedOpen Access
dipwmsearch: a python package for searching di-PWM motifs
2022Open Access
Toward Optimal Fingerprint Indexing for Large Scale Genomics
HAL (Le Centre pour la Communication Scientifique Directe)·2022Open Access
Algorithms and Complexity on Indexing Founder Graphs
Algorithmica·2022· 13 citedOpen Access
A survey of mapping algorithms in the long-reads era
2022· 13 citedOpen Access
Toward Optimal Fingerprint Indexing for Large Scale Genomics
SPIRE - Sciences Po Institutional REpository·2022Open Access
Toward optimal fingerprint indexing for large scale genomics
2021· 5 citedOpen Access
Founder reconstruction enables scalable and seamless pangenomic analysis
Bioinformatics·2021· 16 citedOpen Access
Algorithms and Complexity on Indexing Founder Graphs
arXiv (Cornell University)·2021Open Access
Algorithms and Complexity on Indexing Elastic Founder Graphs.
International Symposium on Algorithms and Computation·2021· 1 cited
A Linear Time Algorithm for Constructing Hierarchical Overlap Graphs
DROPS (Schloss Dagstuhl – Leibniz Center for Informatics)·2021· 1 citedOpen Access
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Frequent Co-authors

Éric Rivals(26), Tuukka Norri(10), Veli Mäkinen(10), Antoine Limasset(9), Jarno Alanko(6), Pierre Peterlongo(5), Camille Marchet(5), Massimo Equi(5), Alexandru I. Tomescu(5), Dmitry Kosolobov(4), Léa Vandamme(4), Thierry Lecroq(3), Jens Stoye(3), Igor Martayan(3), Kristoffer Sahlin(2), Thomas Baudeau(2), Hideo Bannai(2), Gustavo Sacomoto(2), Clément Agret(2), Sung Gwan Park(2)