Koji Atarashi

Biochemistry, Genetics and Molecular Biology · Life Sciences

45h-index32.2kcitations85works44.02yr avg
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Research Topics

Gut microbiota and health(40), Immune Cell Function and Interaction(20), Clostridium difficile and Clostridium perfringens research(17), IL-33, ST2, and ILC Pathways(11), T-cell and B-cell Immunology(10)

Publications85 total

Metagenome-informed metaproteomics of the human gut microbiome, host, and dietary exposome uncovers signatures of health and inflammatory bowel disease
Cell·2025· 49 cited
Identification of specific microbiota members that induce beige fat biogenesis in response to dietary cues
2024Open Access
Commensal consortia decolonize Enterobacteriaceae via ecological control
Nature·2024· 82 citedOpen Access
1054 GUT MICROBIAL BILE ACID MODIFICATIONS MODULATE AGEASSOCIATED DYSMETABOLISM AND CIRCADIAN DYSSYNCHRONY
Gastroenterology·2024
Periportal macrophages protect against commensal-driven liver inflammation
Nature·2024· 89 cited
Rationally-defined microbial consortia suppress multidrug-resistant proinflammatory Enterobacteriaceae via ecological control
2023· 7 citedOpen Access
Gut insulin action protects from hepatocarcinogenesis in diabetic mice comorbid with nonalcoholic steatohepatitis
Nature Communications·2023· 15 citedOpen Access
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan
Nature Microbiology·2023· 92 cited
Diet-mediated constitutive induction of novel IL-4+ ILC2 cells maintains intestinal homeostasis in mice
The Journal of Experimental Medicine·2023· 22 citedOpen Access
An old model with new insights: endogenous retroviruses drive the evolvement toward ASD susceptibility and hijack transcription machinery during development
Molecular Psychiatry·2023· 13 citedOpen Access
Myeloid-like B cells boost emergency myelopoiesis through IL-10 production during infection
The Journal of Experimental Medicine·2023· 13 citedOpen Access
D-amino Acids Ameliorate Experimental Colitis and Cholangitis by Inhibiting Growth of Proteobacteria: Potential Therapeutic Role in Inflammatory Bowel Disease
Cellular and Molecular Gastroenterology and Hepatology·2023· 45 citedOpen Access
Identification of trypsin-degrading commensals in the large intestine
Nature·2022· 90 citedOpen Access
Microbiota imbalance induced by dietary sugar disrupts immune-mediated protection from metabolic syndrome
Cell·2022· 306 citedOpen Access
Targeted suppression of human IBD-associated gut microbiota commensals by phage consortia for treatment of intestinal inflammation
Cell·2022· 467 citedOpen Access
A common epigenetic mechanism across different cellular origins underlies systemic immune dysregulation in an idiopathic autism mouse model
Molecular Psychiatry·2022· 19 cited
Identification of commensals and molecular components mediating trypsin degradation in the large intestine
2022· 1 citedOpen Access
Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians
Nature·2021· 572 cited
Generation of germ-free common marmosets
2021· 5 citedOpen Access
Staphylococcus cohnii is a potentially biotherapeutic skin commensal alleviating skin inflammation
Cell Reports·2021· 48 citedOpen Access
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Frequent Co-authors

Kenya Honda(46), Takeshi Tanoue(16), Masahira Hattori(15), Wataru Suda(14), Kiyoshi Takeda(8), Seiko Narushima(8), Shohei Hori(6), Hidetoshi Morita(6), Ramnik J. Xavier(6), Osamu Ohara(5), Koji Hase(5), Hiroshi Ohno(5), Yoshinori Umesaki(5), Damian R. Plichta(5), Kozue Takeshita(5), Satoshi Sasajima(5), Yuuki Obata(4), Haruhiko Koseki(4), Ivaylo I. Ivanov(4), Tatsuichiro Shima(4)