Eitan Yaffe

Biochemistry, Genetics and Molecular Biology · Life Sciences

13h-index6.0kcitations27works22.02yr avg
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Research Topics

Genomics and Chromatin Dynamics(10), Gut microbiota and health(7), Chromosomal and Genetic Variations(6), Epigenetics and DNA Methylation(4), Genomics and Phylogenetic Studies(3)

Publications27 total

Brief antibiotic use drives human gut bacteria towards low-cost resistance
Nature·2025· 22 citedOpen Access
A short course of antibiotics selects for persistent resistance in the human gut
2023· 1 citedOpen Access
A short course of antibiotics selects for persistent resistance in the human gut
2023· 2 citedOpen Access
misha: Toolkit for Analysis of Genomic Data
2023Open Access
Profiling the human intestinal environment under physiological conditions
Nature·2023· 405 citedOpen Access
Corrigendum: Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors
Genome Research·2022Open Access
Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors
Genome Research·2022· 1 citedOpen Access
Profiling of the human intestinal microbiome and bile acids under physiologic conditions using an ingestible sampling device
2022· 9 citedOpen Access
Precise genotyping of circular mobile elements uncovers human associated plasmids with surprisingly recent common ancestors
2021Open Access
Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation
Nature Microbiology·2019· 170 citedOpen Access
Tracking microbial evolution in the human gut using Hi-C
2019· 5 cited
Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell
Nature Protocols·2015· 162 citedOpen Access
Chromosome Folding: Driver or Passenger of Epigenetic State?: Figure 1.
Cold Spring Harbor Perspectives in Biology·2015· 6 citedOpen Access
Cooperativity, Specificity, and Evolutionary Stability of Polycomb Targeting in Drosophila
Cell Reports·2014· 81 citedOpen Access
Cohesin-mediated interactions organize chromosomal domain architecture
The EMBO Journal·2013· 410 citedOpen Access
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
Nature·2013· 1.6k citedOpen Access
Cohesin-mediated interactions organize chromosomal domain architecture Since Advance Online Publication, accession codes have been added and a change made to the Acknowledgements
2013
Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
Cell·2012· 2.0k citedOpen Access
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
Nature Genetics·2011· 635 cited
Comparative Analysis of DNA Replication Timing Reveals Conserved Large-Scale Chromosomal Architecture
PLoS Genetics·2010· 183 citedOpen Access
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Frequent Co-authors

David A. Relman(10), Amos Tanay(6), Les Dethlefsen(5), Susan Holmes(5), Dan Halperin(4), Tom Sexton(3), Amos Tanay(3), Arati V. Patankar(3), Gui Chen(3), Nitan Shalon(3), Giacomo Cavalli(2), Takashi Nagano(2), Yaniv Lubling(2), Wendy Dean(2), Peter Fraser(2), Sevil Sofueva(2), Wen‐Ching Chan(2), Dimitra Georgopoulou(2), Matteo Vietri Rudan(2), Steven M. Pollard(2)