Bercem Dutagaci

University of California, Merced — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

10h-index269citations31works1.92yr avg
OpenAlex↗ORCID↗Google Scholar↗Lab page↗

Accepting Students?

No reports yet. Know if this professor is taking students?

Research Topics

RNA and protein synthesis mechanisms(18), RNA Research and Splicing(12), Lipid Membrane Structure and Behavior(7), DNA and Nucleic Acid Chemistry(6), Protein Structure and Dynamics(5)

Publications31 total

BPS2026 – CAG repeats reshape RNA polymerase II dynamics in the elongation complex
Biophysical Journal·2026
BPS2026 – Clustering behavior of HRD of Cyclin T1 and CTD of RNA polymerase II
Biophysical Journal·2026
Molecular Basis for Impacts of DSIF on the Dynamics of RNA Polymerase II Elongation Complex
Journal of Chemical Information and Modeling·2025
Molecular Basis for Impacts of DSIF on the Dynamics of RNA Polymerase II Elongation Complex
2025Open Access
Clustering of RNA Polymerase II C-Terminal Domain Models upon Phosphorylation
The Journal of Physical Chemistry B·2024Open Access
Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser
Proceedings of the National Academy of Sciences·2024· 13 citedOpen Access
Clustering of RNA Polymerase II C-Terminal Domain Models upon Phosphorylation
2024Open Access
Binding of small molecule inhibitors to RNA polymerase-Spt5 complex impacts RNA and DNA stability
Journal of Computer-Aided Molecular Design·2023· 4 citedOpen Access
Complex Conformational Space of the RNA Polymerase II C-Terminal Domain upon Phosphorylation
The Journal of Physical Chemistry B·2023· 14 citedOpen Access
Structural basis of transcription: RNA Polymerase II substrate binding and metal coordination at 3.0 Å using a free-electron laser
2023· 1 citedOpen Access
Binding of Small Molecule Inhibitors to RNA Polymerase-Spt5 Complex Impacts RNA and DNA Stability
2023Open Access
Complex Conformational Space of RNA Polymerase II C-Terminal Domain upon Phosphorylation
2023Open Access
Characterization of RNA polymerase II trigger loop mutations using molecular dynamics simulations and machine learning
PLoS Computational Biology·2023· 8 citedOpen Access
Effects of phosphorylation to the conformational space of C-terminal domain of RNA polymerase II
Biophysical Journal·2023Open Access
Analysis of RNA polymerase II trigger loop mutations using simulations and machine learning
Biophysical Journal·2023Open Access
Molecular Dynamics Simulations of Rhodamine B Zwitterion Diffusion in Polyelectrolyte Solutions
The Journal of Physical Chemistry B·2022· 13 citedOpen Access
Characterization of RNA Polymerase II Trigger Loop Mutations using Molecular Dynamics Simulations and Machine Learning
2022· 2 citedOpen Access
Protein–Nucleic Acid Interactions for RNA Polymerase II Elongation Factors by Molecular Dynamics Simulations
Journal of Chemical Information and Modeling·2022· 18 cited
Protein-Nucleic Acid Interactions for RNA Polymerase II Elongation Factors by Molecular Dynamics Simulations
2022Open Access
Author response: Charge-driven condensation of RNA and proteins suggests broad role of phase separation in cytoplasmic environments
2021Open Access
page 1 of 2Next →

Frequent Co-authors

Michael Feig(14), Weththasinghage D. Amith(7), Craig D. Kaplan(5), Adan Gallardo(4), Brandon M. Bogart(4), Chenxi Qiu(4), Clemens Glaubitz(3), Grzegorz Nawrocki(3), Johanna Becker‐Baldus(2), Christopher O. Barnes(2), Simon C. Weiss(2), Jihnu Song(2), Artem Y. Lyubimov(2), Aina E. Cohen(2), Guillermo Calero(2), Maryam Sayadi(2), Bingbing Duan(2), Vincent T. Chen(2), Joyce Goodluck(2), Lisa J. Lapidus(2)