Pralay Mitra

Indian Institute of Technology Kharagpur — India

Biochemistry, Genetics and Molecular Biology · Life Sciences

15h-index594citations65works2.52yr avg
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Research Topics

Protein Structure and Dynamics(27), Bioinformatics and Genomic Networks(16), RNA and protein synthesis mechanisms(11), Enzyme Structure and Function(11), Computational Drug Discovery Methods(8)

Publications65 total

Targeting of HSP27 and MMP-2/9 Crosstalk by High-Throughput Drug Repurposing Strategies Identifies Paroxetine as a Potential Candidate in Glioblastoma
Journal of Medicinal Chemistry·2026
A Transformer based method for the Cap Analysis of Gene Expression and Gene Expression Tag associated 5’ cap site prediction in RNA
2025Open Access
DeepPROTECTNeo: A Deep learning-based Personalized and RV-guided Optimization tool leveraging TCR Epitope interaction using Context-aware Transformers
2025· 1 citedOpen Access
E(Q)AGNN-PPIS: Attention Enhanced Equivariant Graph Neural Network for Protein-Protein Interaction Site Prediction
IEEE Transactions on Signal and Information Processing over Networks·2025
GRANDlib: A simulation pipeline for the Giant Radio Array for Neutrino Detection (GRAND)
Computer Physics Communications·2024· 5 citedOpen Access
E(Q)AGNN-PPIS: Attention Enhanced Equivariant Graph Neural Network for Protein-Protein Interaction Site Prediction
2024Open Access
Deep Reinforcement Learning in Healthcare and Biomedical Research
2024· 3 citedOpen Access
rpcFold: Residual Parallel Convolutional neural network to decipher RNA folding from RNA sequence
2024Open Access
The molecular prognostic score, a classifier for risk stratification of high-grade serous ovarian cancer
Journal of Ovarian Research·2024· 2 citedOpen Access
Deciphering the Lexicon of Protein Targets: A Review on Multifaceted Drug Discovery in the Era of Artificial Intelligence
Molecular Pharmaceutics·2024· 16 cited
Parsers, Data Structures, and Algorithms for Macromolecular Analysis Toolkit (MAT): Design and Implementation
2024
MaTPIP: A deep-learning architecture with eXplainable AI for sequence-driven, feature mixed protein-protein interaction prediction
Computer Methods and Programs in Biomedicine·2023· 19 cited
The molecular prognostic score, a classifier for risk stratification of high-grade serous ovarian cancer
2023Open Access
Correction to: ProFuMCell and ProModb: Web services for analyzing interaction‑based functionally localized protein modules in a cell
Journal of Molecular Modeling·2023Open Access
A novel computational predictive biological approach distinguishes Integrin β1 as a salient biomarker for breast cancer chemoresistance
Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease·2023· 8 cited
Genome surveillance of SARS-CoV-2 variants and their role in pathogenesis focusing on second wave of COVID-19 in India
Scientific Reports·2023· 14 citedOpen Access
Therapeutic targeting of RBPJ, an upstream regulator of ETV6 gene, abrogates ETV6-NTRK3 fusion gene transformations in glioblastoma
Cancer Letters·2022· 9 cited
ProFuMCell and ProModb: Web services for analyzing interaction-based functionally localized protein modules in a cell
Journal of Molecular Modeling·2022
The molecular prognostic score , a classifier for risk stratification of high-grade serous ovarian cancer
Research Square (Research Square)·2022Open Access
A sequence space search engine for computational protein design to modulate molecular functionality
Journal of Biomolecular Structure and Dynamics·2022· 2 citedOpen Access
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Frequent Co-authors

Anupam Banerjee(8), Debnath Pal(8), Mahitosh Mandal(6), Y. Rajesh(5), B.N. Das(5), Yang Zhang(4), Subhayan Das(4), Poulomi Sarkar(4), Sarthak Banerjee(4), Sarbar Ali Saha(4), Siddik Sarkar(4), Abantika Pal(4), David Shultis(3), Angana Biswas(3), Jeffrey J. Czajka(2), Felicia Gray(2), Tomasz Cierpicki(2), Neelkamal Kapoor(2), Soumyadeep Bhaduri(2), Debraj Das(2)