Anton Bankevich

Pennsylvania State University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

12h-index28.8kcitations26works21.72yr avg
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Research Topics

Genomics and Phylogenetic Studies(17), Chromosomal and Genetic Variations(8), Microbial Community Ecology and Physiology(4), Plant Virus Research Studies(3), Algorithms and Data Compression(3)

Publications26 total

Comparative Analysis of Mammalian Adaptive Immune Loci Revealed Spectacular Divergence and Common Genetic Patterns
Molecular Biology and Evolution·2025· 5 citedOpen Access
CloseRead: a tool for assessing assembly errors in immunoglobulin loci applied to vertebrate long-read genome assemblies
Genome biology·2025· 4 citedOpen Access
GnnDebugger: GNN based error correction in De Bruijn Graphs
2025· 1 citedOpen Access
Complete sequencing of ape genomes
Nature·2025· 90 citedOpen Access
Complete sequencing of ape genomes
2024· 24 citedOpen Access
Assessing Assembly Errors in Immunoglobulin Loci: A Comprehensive Evaluation of Long-read Genome Assemblies Across Vertebrates
2024· 6 citedOpen Access
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads
Nature Biotechnology·2022· 109 cited
PacBio HiFi read assemblies of human, fly, maize and mouse evaluated in LJA paper
2021Open Access
PacBio HiFi read assemblies of human, fly, maize and mouse evaluated in LJA paper
Zenodo (CERN European Organization for Nuclear Research)·2021Open Access
ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs
Microbiome·2021· 4 citedOpen Access
mosaicFlye: Resolving long mosaic repeats using long error-prone reads
2020· 7 citedOpen Access
MosaicFlye: Resolving Long Mosaic Repeats Using Long Reads
Lecture notes in computer science·2020· 1 cited
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
Genome biology·2019· 79 citedOpen Access
cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs
Bioinformatics·2019· 41 citedOpen Access
Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity
Cell Systems·2018· 9 citedOpen Access
Long Reads Enable Accurate Estimates of Complexity of Metagenomes
Lecture notes in computer science·2018· 2 cited
Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly
Genome biology·2016· 144 citedOpen Access
TruSPAdes: barcode assembly of TruSeq synthetic long reads
Nature Methods·2016· 48 cited
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes
Journal of Computational Biology·2015· 81 citedOpen Access
ExSPAnder: a universal repeat resolver for DNA fragment assembly
Bioinformatics·2014· 137 citedOpen Access
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Frequent Co-authors

Pavel A. Pevzner(17), Yana Safonova(7), Dmitry Antipov(6), Sergey Nurk(4), Alexey Gurevich(4), Andrey D. Prjibelski(3), Alexey Pyshkin(3), Alexander Sirotkin(3), Glenn Tesler(3), Max A. Alekseyev(3), Anton Korobeynikov(3), Alla Lapidus(3), Matt Pennell(3), Corey T. Watson(3), Son Pham(2), Yakov Sirotkin(2), Ramūnas Stepanauskas(2), Scott Clingenpeel(2), Tanja Woyke(2), Jeffrey S. McLean(2)