Anton Korobeynikov

St Petersburg University — Russia

Biochemistry, Genetics and Molecular Biology · Life Sciences

37h-index15.9kcitations101works8.82yr avg
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Research Topics

Genomics and Phylogenetic Studies(51), Microbial Community Ecology and Physiology(22), Microbial Natural Products and Biosynthesis(18), RNA and protein synthesis mechanisms(11), Bacteriophages and microbial interactions(11)

Publications101 total

Blackbird: structural variant detection using synthetic and low-coverage long-reads
Bioinformatics Advances·2024· 1 citedOpen Access
Blackbird: structural variant detection using synthetic and low-coverage long-reads
2024Open Access
SpLitteR: diploid genome assembly using TELL-Seq linked-reads and assembly graphs
PeerJ·2024· 2 citedOpen Access
Logan: Planetary-Scale Genome Assembly Surveys Life’s Diversity
2024· 47 citedOpen Access
Hi-C metagenomics facilitate comparative genome analysis of bacteria and yeast from spontaneous beer and cider
Food Microbiology·2024· 3 cited
Hi-C Metagenomics Facilitate Comparative Genome Analysis of Bacteria and Yeast from Spontaneous Beer and Cider
SSRN Electronic Journal·2024Open Access
Benchmarking State-of-the-Art Approaches for Norovirus Genome Assembly in Metagenome Sample
Biology·2023· 4 citedOpen Access
Protocol for refining metagenomic binning with BinSPreader
STAR Protocols·2023· 1 citedOpen Access
BinSPreader binning refining protocol
Figshare·2023Open Access
BinSPreader binning refining protocol
Figshare·2023Open Access
BinSPreader binning refining protocol
Figshare·2023Open Access
SpLitteR: Diploid genome assembly using TELL-Seq linked-reads and assembly graphs
2022· 3 citedOpen Access
wastewaterSPAdes: SARS-CoV-2 strain deconvolution using SPAdes toolkit
2022· 3 citedOpen Access
MGnify: the microbiome sequence data analysis resource in 2023
Nucleic Acids Research·2022· 400 citedOpen Access
MetaGT: A pipeline for de novo assembly of metatranscriptomes with the aid of metagenomic data
Frontiers in Microbiology·2022· 11 citedOpen Access
Simulated data for MetaGT publication
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Simulated data for MetaGT publication
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Benchmarking state-of-the-art approaches for norovirus genome assembly in metagenome sample
Research Square (Research Square)·2022Open Access
BinSPreader: Refine binning results for fuller MAG reconstruction
iScience·2022· 8 citedOpen Access
Benchmarking state-of-the-art approaches for norovirus genome assembly in metagenome sample
2022· 1 citedOpen Access
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Frequent Co-authors

Pavel A. Pevzner(14), Alla Lapidus(10), Alexey Gurevich(10), Lena Gerwick(10), William H. Gerwick(10), Dmitry Meleshko(9), Sergey Nurk(8), Dmitry Antipov(7), Alexander Shlemov(7), Pieter C. Dorrestein(7), Andrey D. Prjibelski(5), Rayan Chikhi(5), Hosein Mohimani(5), David H. Sherman(5), Emily A. Monroe(5), Tiago Leão(5), Mikhail Kolmogorov(4), Gherman Uritskiy(4), Nina Golyandina(4), Anton Bankevich(3)