Patrick Marks

10X Genomics (United States) — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

17h-index11.5kcitations28works0.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(14), RNA and protein synthesis mechanisms(7), Genomics and Rare Diseases(5), Genomic variations and chromosomal abnormalities(4), T-cell and B-cell Immunology(3)

Publications28 total

Efficient detection and assembly of non-reference DNA sequences with synthetic long reads
Nucleic Acids Research·2022· 6 citedOpen Access
scHLAcount: allele-specific HLA expression from single-cell gene expression data
Bioinformatics·2020· 29 citedOpen Access
Human-specific tandem repeat expansion and differential gene expression during primate evolution
Proceedings of the National Academy of Sciences·2019· 153 citedOpen Access
scHLAcount: Allele-specific HLA expression from single-cell gene expression data
2019Open Access
Multi-platform discovery of haplotype-resolved structural variation in human genomes
Nature Communications·2019· 983 citedOpen Access
Resolving the full spectrum of human genome variation using Linked-Reads
Genome Research·2019· 291 citedOpen Access
Detection and assembly of novel sequence insertions using Linked-Read technology
2019· 14 citedOpen Access
Resolving the Full Spectrum of Human Genome Variation using Linked-Reads
2017· 40 citedOpen Access
Linked-Read sequencing resolves complex structural variants
2017· 11 citedOpen Access
Multi-platform discovery of haplotype-resolved structural variation in human genomes
2017· 157 citedOpen Access
Abstract 3602: Linked-Reads enable detailed, phased resolution of structural variation in the cancer genome
Cancer Research·2016
Molecular Cytogenetics Using Linked-Reads
Cancer Genetics·2016
A hybrid approach for de novo human genome sequence assembly and phasing
Nature Methods·2016· 245 citedOpen Access
Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
Nature Biotechnology·2016· 784 citedOpen Access
Abstract 4742: Using 1ng of DNA to detect haplotype phasing and gene fusions from whole exome sequencing of cancer cell lines
Cancer Research·2015
HLA Typing for the Next Generation
PLoS ONE·2015· 150 citedOpen Access
Highly efficient detection of hydrogen peroxide in solution and in the vapor phase via fluorescence quenching
Chemical Communications·2015· 22 cited
Chiral cationic polyamines for chiral microcapsules and siRNA delivery
Bioorganic & Medicinal Chemistry Letters·2013· 3 citedOpen Access
Highly efficient quenching of nanoparticles for the detection of electron-deficient nitroaromatics
Journal of Polymer Science Part A Polymer Chemistry·2013· 23 cited
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
Nature Methods·2013· 4.2k cited
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Frequent Co-authors

Sofia Kyriazopoulou-Panagiotopoulou(9), Deanna M. Church(7), Michael Schnall-Levin(7), Jonas Korlach(6), Mindy Levine(6), Chen-Shan Chin(5), Adrian Fehr(5), Haynes Heaton(5), Heather Ordonez(5), Kristina Giorda(5), Stephen R. Williams(5), Evan E. Eichler(4), Keith P. Bjornson(4), Mark Chaisson(4), David Porubský(4), Ryan L. Collins(4), Alex Hastie(4), Peter A. Audano(4), Han Cao(4), Joyce Lee(4)