Xiaoning Qian

Brookhaven National Laboratory — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

33h-index4.8kcitations348works1.62yr avg
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Research Topics

Bioinformatics and Genomic Networks(79), Gene Regulatory Network Analysis(60), Gene expression and cancer classification(57), Computational Drug Discovery Methods(28), Machine Learning in Materials Science(27)

Publications348 total

Rapid sequence-based screening of structure-disrupting protein mutations
2026Open Access
An Integrated and Configurable End-to-End Pipeline for Longitudinal Cell Painting Analysis
2026Open Access
Interpretable transcriptome-to-phenotype modeling of cell-painting nuclear morphology features from RNA-seq under low-dose radiation exposure
2026Open Access
Structure-Based TCR–pMHC Binding Prediction and Generalization to Unseen Peptides
2026Open Access
Generative Artificial Intelligence for Biology: Toward Unifying Models, Algorithms, and Modalities
2026Open Access
INR-TEM: Robust cavity detection in multifocus TEM images via implicit neural representations
APL Machine Learning·2026Open Access
Generative Artificial Intelligence for Biomolecules: Toward Unifying Models, Algorithms, and Modalities
2026Open Access
InvarGC: Invariant Granger Causality for Heterogeneous Interventional Time Series under Latent Confounding
arXiv (Cornell University)·2025Open Access
Data-Augmented Few-Shot Neural Emulator for Computer-Model System Identification
arXiv (Cornell University)·2025Open Access
CYP1B1-AS1 regulates CYP1B1 to promote Coxiella burnetii pathogenesis by inhibiting ROS and host cell death
Nature Communications·2025· 4 citedOpen Access
Uncertainty-Aware Adaptation of Large Language Models for Protein-Protein Interaction Analysis
2025
A Benchmark for Quantum Chemistry Relaxations via Machine Learning Interatomic Potentials.
PubMed·2025Open Access
Cost-effective Reduced-Order Modeling via Bayesian Active Learning
arXiv (Cornell University)·2025Open Access
Brucella-driven host N-glycome remodeling controls infection
Cell Host & Microbe·2025
Scale-Invariant Implicit Neural Representations for Object Counting
2025
PhenoGraph: A Multi-Agent Framework for Phenotype-driven Discovery in Spatial Transcriptomics Data Augmented with Knowledge Graphs
2025· 1 citedOpen Access
Toward Greater Autonomy in Materials Discovery Agents: Unifying Planning, Physics, and Scientists
arXiv (Cornell University)·2025Open Access
A composition-based predictive model for the transformation strain of NiTi shape memory alloys
Acta Materialia·2025· 2 cited
Invariant Tokenization of Crystalline Materials for Language Model Enabled Generation
arXiv (Cornell University)·2025· 2 citedOpen Access
Uncertainty-Aware Adaptation of Large Language Models for Protein-Protein Interaction Analysis
ArXiv.org·2025· 1 citedOpen Access
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Frequent Co-authors

Edward R. Dougherty(13), Mingyuan Zhou(8), Ehsan Hajiramezanali(7), Arman Hasanzadeh(5), Nick Duffield(5), Krishna R. Narayanan(5), Shahin Boluki(4), Raymundo Arróyave(4), Byung-Jun Yoon(4), Bingxiong Lin(3), Yu Sun(3), Alireza Karbalayghareh(3), Ivan Ivanov(3), Noushin Ghaffari(3), Mohammad Shahrokh Esfahani(3), Siamak Zamani Dadaneh(3), Chung-Chi Tsai(2), Kuang-Jui Hsu(2), Yen‐Yu Lin(2), Donald P. Dione(2)