Byung-Jun Yoon

Brookhaven National Laboratory — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

24h-index2.7kcitations231works2.92yr avg
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Research Topics

Bioinformatics and Genomic Networks(60), Gene Regulatory Network Analysis(40), RNA and protein synthesis mechanisms(34), Computational Drug Discovery Methods(33), Machine Learning in Bioinformatics(33)

Publications231 total

Rapid sequence-based screening of structure-disrupting protein mutations
2026Open Access
A Spatio-Temporal Analysis Framework for Characterizing Radiation-Induced Genomic Instability
2026Open Access
An Integrated and Configurable End-to-End Pipeline for Longitudinal Cell Painting Analysis
2026Open Access
Interpretable transcriptome-to-phenotype modeling of cell-painting nuclear morphology features from RNA-seq under low-dose radiation exposure
2026Open Access
Structure-Based TCR–pMHC Binding Prediction and Generalization to Unseen Peptides
2026Open Access
Generative Artificial Intelligence for Biology: Toward Unifying Models, Algorithms, and Modalities
2026Open Access
Generative Artificial Intelligence for Biomolecules: Toward Unifying Models, Algorithms, and Modalities
2026Open Access
Variable rate neural compression for sparse detector data
Patterns·2026Open Access
Enhancing generative molecular design <i>via</i> uncertainty-guided fine-tuning of variational autoencoders
Molecular Systems Design & Engineering·2025Open Access
Efficient design of rna sequences with desired properties, structure, and motifs using a grammar variational autoencoder
arXiv (Cornell University)·2025Open Access
Uncertainty-Aware Adaptation of Large Language Models for Protein-Protein Interaction Analysis
2025
A Benchmark for Quantum Chemistry Relaxations via Machine Learning Interatomic Potentials.
PubMed·2025Open Access
Cost-effective Reduced-Order Modeling via Bayesian Active Learning
arXiv (Cornell University)·2025Open Access
Scale-Invariant Implicit Neural Representations for Object Counting
2025
Forward Target Propagation: A Forward-Only Approach to Global Error Credit Assignment via Local Losses
arXiv (Cornell University)·2025Open Access
Comparative Performance Evaluation of Large Language Models for Extracting Molecular Interactions and Pathway Knowledge
Journal of Computational Biology·2025· 3 cited
Uncertainty-Aware Adaptation of Large Language Models for Protein-Protein Interaction Analysis
ArXiv.org·2025· 1 citedOpen Access
Variable Rate Neural Compression for Sparse Detector Data
SSRN Electronic Journal·2025Open Access
An Effective Pipeline for Training Variational Autoencoders for Synthesizable and Optimized Molecular Design
IEEE Access·2024· 2 citedOpen Access
<i>In silico</i> design of immunogenic antigen cocktail via affinity maturation-guided optimization
Bioinformatics Advances·2024Open Access
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Frequent Co-authors

Edward R. Dougherty(13), Xiaoning Qian(13), P. P. Vaidyanathan(9), Sayed Mohammad Ebrahim Sahraeian(7), Francis J. Alexander(6), Man S. Kim(3), Won‐Bo Shim(3), Junjie Su(2), Roozbeh Dehghannasiri(2), Mohammad Shahrokh Esfahani(2), Navadon Khunlertgit(2), Guang Zhao(2), Hyundoo Jeong(2), Raymundo Arróyave(2), Xiaofeng Qian(2), Charles P. Woloshuk(2), Ying Wang(1), Vinayak Brahmakshatriya(1), Huifeng Zhu(1), Blanca Lupiani(1)