Daofeng Li

Biochemistry, Genetics and Molecular Biology · Life Sciences

43h-index14.9kcitations154works6.12yr avg
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Research Topics

Epigenetics and DNA Methylation(50), Genomics and Chromatin Dynamics(42), RNA modifications and cancer(32), Genomics and Phylogenetic Studies(23), Plant-Microbe Interactions and Immunity(11)

Publications151 total

An integrated view of the structure and function of the human 4D nucleome
Nature·2025· 4 citedOpen Access
The IGVF catalog—from genetic variation to function
Nucleic Acids Research·2025· 3 citedOpen Access
Multiscale Spatial Transcriptomic Atlas of Human Basal Ganglia Cell-Type and Cellular Community Organization
2025· 2 citedOpen Access
Comprehensive benchmarking of somatic single-nucleotide variant and indel detection at ultra-low allele fractions using short- and long-read data
2025· 1 citedOpen Access
Cross-tissue molecular responses in the liver and blood after toxicant exposures
2025Open Access
A Pangenomic Method for Establishing a Somatic Variant Detection Resource in HapMap Mixtures
2025· 3 citedOpen Access
Toxicogenomic Insights into Environmental Toxicant Exposures: The TaRGET II Resource
2025Open Access
Comprehensive Transcriptomic and Epigenomic Insights into Environmental Toxicant Exposures: The TaRGET II Resource
2025· 2 citedOpen Access
ToxiTaRGET: a multi-omics resource for toxicant-responsive molecular targets
2025Open Access
A comprehensive data repository of environmental toxicants exposed mouse epigenomes from the TaRGET II Consortium
2025Open Access
Single cell multiomics reveals drivers of metabolic dysfunction-associated steatohepatitis
2025· 2 citedOpen Access
Single cell multiomics and 3D genome architecture reveal novel pathways of human heart failure
2025· 1 citedOpen Access
WashU Epigenome Browser update 2025
Nucleic Acids Research·2025· 4 citedOpen Access
Integrative Molecular and Functional Analysis of Human Sperm Subpopulations to Identify New Biomarkers of Fertilization Potential
Archives of Medical Research·2025· 1 cited
Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser
Genome Research·2025· 2 cited
methylGrapher: genome-graph-based processing of DNA methylation data from whole genome bisulfite sequencing
Nucleic Acids Research·2025· 5 citedOpen Access
Single-cell analysis of the epigenome and 3D chromatin architecture in the human retina
2024· 4 citedOpen Access
EPCO-08. EPIGENETIC THERAPY POTENTIATES TRANSPOSABLE ELEMENT TRANSCRIPTION TO CREATE TUMOR-ENRICHED ANTIGENS IN GLIOBLASTOMA
Neuro-Oncology·2024Open Access
Epigenetic and 3D genome reprogramming during the aging of human hippocampus
2024· 6 citedOpen Access
An integrated view of the structure and function of the human 4D nucleome
2024· 16 citedOpen Access
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Frequent Co-authors

Ting Wang(39), Bo Zhang(19), Xiaoyun Xing(16), J Costello(12), Rebecca F. Lowdon(9), Hyung Joo Lee(8), Xin Zhou(7), Martin Hirst(7), Chibo Hong(6), Marco A. Marra(6), Pamela A. F. Madden(6), Michael Stevens(5), Peggy Farnham(5), H. Josh Jang(5), Tao Wang(5), Jiangli Dong(5), Philippe Gascard(4), David Haussler(4), Thea D. Tlsty(4), Mayank Choudhary(4)