Angela Oliveira Pisco

Howard Hughes Medical Institute — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

40h-index10.0kcitations152works11.42yr avg
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Research Topics

Single-cell and spatial transcriptomics(57), Cell Image Analysis Techniques(25), Gene Regulatory Network Analysis(13), COVID-19 Clinical Research Studies(12), Immune cells in cancer(10)

Publications143 total

Benchmarking cell type and gene set annotation by large language models with AnnDictionary
Nature Communications·2025· 4 citedOpen Access
Acute Respiratory Distress Syndrome Molecular Phenotypes Have Distinct Lower Respiratory Tract Transcriptomes
American Journal of Respiratory and Critical Care Medicine·2025· 5 citedOpen Access
A molecular cell atlas of mouse lemur, an emerging model primate
Nature·2025· 7 citedOpen Access
Astrocyte specification in the mouse septum is shaped by both developmental origin and local signals
Nature Neuroscience·2025· 5 citedOpen Access
Defining and benchmarking open problems in single-cell analysis
Nature Biotechnology·2025· 17 citedOpen Access
Single-nucleus RNA sequencing reveals a preclinical model for the most common subtype of glioblastoma
Communications Biology·2025· 6 citedOpen Access
Abstract 5003: Machine-learning informed multifactorial biomarkers as an approach to stratify survival outcomes among ADC treated patients
Cancer Research·2025
Single-cell analysis reveals <i>Mycobacterium tuberculosis</i> ESX-1–mediated accumulation of permissive macrophages in infected mouse lungs
Science Advances·2025· 12 citedOpen Access
Consensus prediction of cell type labels in single-cell data with popV
Nature Genetics·2024· 29 citedOpen Access
Single-cell analysis of breast cancer metastasis reveals epithelial-mesenchymal plasticity signatures associated with poor outcomes
Journal of Clinical Investigation·2024· 17 citedOpen Access
How Mycobacterium tuberculosis builds a home: Single-cell analysis reveals M. tuberculosis ESX-1-mediated accumulation of anti-inflammatory macrophages in infected mouse lungs
2024Open Access
Defining and benchmarking open problems in single-cell analysis
2024· 16 citedOpen Access
Dysregulation of CD4<sup>+</sup>and CD8<sup>+</sup>resident memory T, myeloid, and stromal cells in steroid-experienced, checkpoint inhibitor colitis
Journal for ImmunoTherapy of Cancer·2024· 9 citedOpen Access
Multimodal classification of neurons in the lateral septum
2024· 16 citedOpen Access
Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis
Nature Communications·2024· 43 citedOpen Access
Deep Learning Analysis on Images of iPSC-derived Motor Neurons Carrying fALS-genetics Reveals Disease-Relevant Phenotypes
2024· 10 citedOpen Access
scDiffCom: a tool for differential analysis of cell–cell interactions provides a mouse atlas of aging changes in intercellular communication
Nature Aging·2023· 23 citedOpen Access
Single-nucleus RNA sequencing provides insights into the GL261-GSC syngeneic mouse model of glioblastoma
2023· 4 cited
Developmental origin and local signals cooperate to determine septal astrocyte identity
2023· 4 citedOpen Access
Consensus prediction of cell type labels with popV
2023· 4 citedOpen Access
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Frequent Co-authors

Norma Neff(14), Spyros Darmanis(8), Stephen R. Quake(8), Fiona M. Watt(8), Eran Mick(8), Joseph L. DeRisi(8), Angela M. Detweiler(8), Kirsten N. Kangelaris(8), Jim Karkanias(7), Aaron McGeever(7), Paula Hayakawa Serpa(7), Stephanie A. Christenson(7), Charles Langelier(7), Natasha Spottiswoode(6), Carolyn S. Calfee(6), Emanuel Rognoni(5), Priya A. Prasad(5), Michelle Tan(5), Amy Kistler(5), Alejandra Jáuregui(5)