Ruriko Yoshida

Naval Postgraduate School — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

21h-index2.3kcitations194works0.92yr avg
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Research Topics

Genomics and Phylogenetic Studies(54), Genetic diversity and population structure(40), Polynomial and algebraic computation(34), Commutative Algebra and Its Applications(27), Evolution and Paleontology Studies(19)

Publications194 total

Adversarially robust neural network decision boundaries via tropical geometry
Neural Networks·2026Open Access
Bandwidth Selection of Density Estimators over Treespaces
arXiv (Cornell University)·2025Open Access
Bandwidth Selection of Density Estimators over Treespaces
ArXiv.org·2025Open Access
Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian
ArXiv.org·2025Open Access
Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian
arXiv (Cornell University)·2025Open Access
Tropical Fréchet Means
DepositOnce·2025Open Access
Projected Gradient Descent Method for Tropical Principal Component Analysis over Tree Space
Mathematics·2025Open Access
Projected Gradient Descent Method for Tropical Principal Component Analysis over Tree Space
arXiv (Cornell University)·2025Open Access
Tropical Fréchet Means
arXiv (Cornell University)·2025Open Access
Maximum inscribed and minimum enclosing tropical balls of tropical polytopes and applications to volume estimation and uniform sampling
Computational Geometry·2025· 1 cited
Tropical geometric tools for machine learning: the TML package
Journal of Software for Algebra and Geometry·2024· 3 citedOpen Access
Tropical Logistic Regression Model on Space of Phylogenetic Trees
Bulletin of Mathematical Biology·2024· 6 citedOpen Access
Tropical Neural Networks and Its Applications to Classifying Phylogenetic Trees
2024· 2 cited
Tropical Density Estimation of Phylogenetic Trees
IEEE/ACM Transactions on Computational Biology and Bioinformatics·2024· 3 cited
Connecting Tables by Allowing Negative Cell Counts
Journal of Statistical Theory and Practice·2024· 1 cited
Tropical Fermat-Weber Polytropes
arXiv (Cornell University)·2024Open Access
Tropical Decision Boundaries for Neural Networks Are Robust Against Adversarial Attacks
arXiv (Cornell University)·2024Open Access
Maximum Inscribed and Minimum Enclosing Tropical Balls of Tropical Polytopes and Applications to Volume Estimation and Uniform Sampling
SSRN Electronic Journal·2024· 1 citedOpen Access
Adversarially Robust Neural Network Decision Boundaries Via Tropical Geometry
SSRN Electronic Journal·2024Open Access
Tropical support vector machine and its applications to phylogenomics
Algebraic Statistics·2023· 4 citedOpen Access
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Frequent Co-authors

David Haws(9), Peter Huggins(9), Akimichi Takemura(6), Jesús A. De Loera(5), Raymond Hemmecke(5), Grady Weyenberg(5), Christopher L. Schardl(4), Bo Lin(4), Hisayuki Hara(3), Daniel K. Howe(3), Anthea Monod(3), Jian Zhao(2), Sen-ching S. Cheung(2), Leon Zhang(2), Lior Pachter(2), Xiaoxian Tang(2), Chrysafis Vogiatzis(2), Carolyn A. Young(1), Uljana Hesse(1), Stefan G. Amyotte(1)