Adam Gayoso

Google (United States) — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

18h-index6.0kcitations42works21.82yr avg
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Research Topics

Single-cell and spatial transcriptomics(27), Cell Image Analysis Techniques(15), Gene expression and cancer classification(8), Cancer Genomics and Diagnostics(8), Gene Regulatory Network Analysis(6)

Publications39 total

Deep generative modeling of sample-level heterogeneity in single-cell genomics
Nature Methods·2025· 7 citedOpen Access
Scvi-hub: an actionable repository for model-driven single-cell analysis
Nature Methods·2025· 2 citedOpen Access
AlphaGenome: advancing regulatory variant effect prediction with a unified DNA sequence model
2025· 80 citedOpen Access
Defining and benchmarking open problems in single-cell analysis
2024· 16 citedOpen Access
Scvi-hub: an actionable repository for model-driven single cell analysis
2024· 4 citedOpen Access
Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells
Nature Methods·2023· 103 citedOpen Access
An empirical Bayes method for differential expression analysis of single cells with deep generative models
Proceedings of the National Academy of Sciences·2023· 51 citedOpen Access
The scverse project provides a computational ecosystem for single-cell omics data analysis
Nature Biotechnology·2023· 299 cited
FUCCI RPE1 cells
Figshare·2023Open Access
FUCCI U2OS cells
Figshare·2023Open Access
Deep generative modeling of sample-level heterogeneity in single-cell genomics
2022· 33 citedOpen Access
Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells
2022· 33 citedOpen Access
An Empirical Bayes Method for Differential Expression Analysis of Single Cells with Deep Generative Models
2022· 13 citedOpen Access
PeakVI: A deep generative model for single-cell chromatin accessibility analysis
Cell Reports Methods·2022· 93 citedOpen Access
A Python library for probabilistic analysis of single-cell omics data
Nature Biotechnology·2022· 728 citedOpen Access
Cell2location maps fine-grained cell types in spatial transcriptomics
Nature Biotechnology·2022· 1.1k cited
Mouse retina
Figshare·2022Open Access
Permutation score
Figshare·2022Open Access
Permutation score densities
Figshare·2022Open Access
PBMCs
Figshare·2022Open Access
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Frequent Co-authors

Nir Yosef(21), Romain Lopez(13), Jeffrey Regier(10), Aaron Streets(9), Philipp Weiler(9), Pierre Boyeau(8), Michael I. Jordan(8), Fabian J. Theis(7), Justin Hong(6), Mohammad Lotfollahi(6), Dana Pe’er(5), Can Ergen(5), Galen Xing(4), Valeh Valiollah Pour Amiri(4), Tal Ashuach(4), Valentine Svensson(4), Zoë Steier(4), Martin Kim(4), Vitalii Kleshchevnikov(3), Manu Setty(3)