Metin Balaban

Princeton University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

16h-index1.6kcitations40works41.92yr avg
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Research Topics

Genomics and Phylogenetic Studies(26), Genetic diversity and population structure(13), Gut microbiota and health(7), Chromosomal and Genetic Variations(6), Microbial Community Ecology and Physiology(6)

Publications40 total

Abstract B013: Chromosomal rearrangements at the YAP/TAZ pathway genes are associated with heterogeneity and stem cell-like castration-resistant prostate cancer
Cancer Research·2025
Genomic alterations in the YAP/TAZ pathway are associated with stem cell-like castration-resistant prostate cancer
2025Open Access
Tumour evolution and microenvironment interactions in 2D and 3D space
Nature·2024· 102 citedOpen Access
Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
Nature Methods·2024· 18 citedOpen Access
HATCHet2: clone- and haplotype-specific copy number inference from bulk tumor sequencing data
Genome biology·2024· 9 citedOpen Access
Complexity of avian evolution revealed by family-level genomes
Nature·2024· 245 citedOpen Access
Abstract 1205: Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
Cancer Research·2024
Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
2024· 3 citedOpen Access
Inferring Allele-Specific Copy Number Aberrations and Tumor Phylogeography from Spatially Resolved Transcriptomics
Lecture notes in computer science·2024
Author Correction: Generation of accurate, expandable phylogenomic trees with uDance
Nature Biotechnology·2023Open Access
Author Correction: Greengenes2 unifies microbial data in a single reference tree
Nature Biotechnology·2023· 20 citedOpen Access
Greengenes2 unifies microbial data in a single reference tree
Nature Biotechnology·2023· 490 citedOpen Access
Generation of accurate, expandable phylogenomic trees with uDance
Nature Biotechnology·2023· 21 citedOpen Access
Multi-level analysis of the gut–brain axis shows autism spectrum disorder-associated molecular and microbial profiles
Nature Neuroscience·2023· 184 citedOpen Access
Data for article: Generation of accurate, expandable phylogenomic trees with uDANCE
Harvard Dataverse·2023· 1 citedOpen Access
Greengenes2 enables a shared data universe for microbiome studies
2022· 42 citedOpen Access
Distance-Based Phylogenetic Placement with Statistical Support
Biology·2022· 3 citedOpen Access
DEPP: Deep Learning Enables Extending Species Trees using Single Genes
Systematic Biology·2022· 35 citedOpen Access
Genome-wide alignment-free phylogenetic distance estimation under a no strand-bias model
Bioinformatics Advances·2022· 4 citedOpen Access
Fast and Accurate Branch Support Calculation for Distance-Based Phylogenetic Placements
Lecture notes in computer science·2022· 1 cited
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Frequent Co-authors

Siavash Mirarab(28), Yueyu Jiang(13), Qiyun Zhu(13), Benjamin J. Raphael(8), Daniel McDonald(7), Rob Knight(7), Uyen Mai(5), Cong Ma(5), Li Ding(5), Kalen Cantrell(4), Antonio González(4), Niema Moshiri(4), Shahab Sarmashghi(4), Daniel Roush(4), Eleonora Rachtman(4), Vineet Bafna(4), Siqi Chen(4), Md. Shamsuzzoha Bayzid(4), James T. Morton(3), Giorgia Nicolaou(3)