Alexis Dereeper

Institut de Recherche en Infectiologie de Montpellier — France

Agricultural and Biological Sciences · Life Sciences

27h-index8.1kcitations132works2.32yr avg
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Research Topics

Horticultural and Viticultural Research(29), Genomics and Phylogenetic Studies(23), Genetic Mapping and Diversity in Plants and Animals(20), Plant Pathogenic Bacteria Studies(18), Plant Virus Research Studies(15)

Publications132 total

Chromosome-Scale Genome Assembly of Australian Finger Lime and Resequencing Reveal the Hidden Diversity of Oceanian Citrus
2025Open Access
Polyploidy modulates the adaptation to water deficit in citrus scion/rootstock associations evaluated under controlled pot condition and relates to specific changes in root and leaf transcriptome
Plant Stress·2025Open Access
A super-pangenome for cultivated citrus reveals evolutive features during the allopatric phase of their reticulate evolution
2024· 7 citedOpen Access
The fly route of extended-spectrum-β-lactamase-producing Enterobacteriaceae dissemination in a cattle farm: from the ecosystem to the molecular scale
Frontiers in Antibiotics·2024· 2 citedOpen Access
Meiotic Behaviors of Allotetraploid Citrus Drive the Interspecific Recombination Landscape, the Genetic Structures, and Traits Inheritance in Tetrazyg Progenies Aiming to Select New Rootstocks
Plants·2023· 3 citedOpen Access
Naegleria genus pangenome reveals new structural and functional insights into the versatility of these free-living amoebae
Frontiers in Microbiology·2023· 16 citedOpen Access
Complete Genome Sequencing of Three Clade-1 Xanthomonads Reveals Genetic Determinants for a Lateral Flagellin and the Biosynthesis of Coronatine-Like Molecules in <i>Xanthomonas</i>
Phytopathology·2023· 4 citedOpen Access
Emergence of a Novel Lineage and Wide Spread of a blaCTX-M-15/IncHI2/ST1 Plasmid among Nosocomial Enterobacter in Guadeloupe
Antibiotics·2022· 6 citedOpen Access
Novel genetic traits in <i>Xanthomonas</i> unveiled by the complete genome sequencing of three clade-1 xanthomonads
2022Open Access
Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island, Guadeloupe (French West Indies)
Microbiology Spectrum·2022· 38 citedOpen Access
Clustered Regularly Interspaced Short Palindromic Repeats in Xanthomonas citri—Witnesses to a Global Expansion of a Bacterial Pathogen over Time
Microorganisms·2022· 9 citedOpen Access
PanExplorer: a web-based tool for exploratory analysis and visualization of bacterial pan-genomes
Bioinformatics·2022· 63 citedOpen Access
getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories
BMC Bioinformatics·2022· 5 citedOpen Access
Additional file 2 of getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories
Figshare·2022Open Access
KaruBioNet: a network and discussion group for a better collaboration and structuring of bioinformatics in Guadeloupe (French West Indies)
Bioinformatics Advances·2022· 9 citedOpen Access
Additional file 1 of getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories
Figshare·2022Open Access
Shifting From Sectoral to Integrated Surveillance by Changing Collaborative Practices: Application to West Nile Virus Surveillance in a Small Island State of the Caribbean
Frontiers in Public Health·2021· 7 citedOpen Access
Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium–legume symbiosis
Nature Communications·2021· 65 citedOpen Access
TAL Effector Repertoires of Strains of Xanthomonas phaseoli pv. manihotis in Commercial Cassava Crops Reveal High Diversity at the Country Scale
Microorganisms·2021· 19 citedOpen Access
Intermediate Inheritance with Disomic Tendency in Tetraploid Intergeneric Citrus × Poncirus Hybrids Enhances the Efficiency of Citrus Rootstock Breeding
Agronomy·2020· 10 citedOpen Access
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Frequent Co-authors

Philippe Lashermes(9), Manuel Ruíz(9), Marie‐Christine Combes(8), Gaëtan Droc(7), Valentin Guignon(5), Stéphanie Bocs(5), Olivier Garsmeur(5), Mathieu Rouard(5), Xavier Argout(5), Patrice This(5), Dany Séverac(5), Pierre Mournet(5), Alberto Cenci(4), Christine Tranchant‐Dubreuil(4), Loïc Le Cunff(4), Yann Hueber(4), Benoît Bertrand(4), Leila Riahi(4), Néjia Zoghlami(4), Ahmed Mliki(4)