Alex Gavryushkin

University of Canterbury — New Zealand

Biochemistry, Genetics and Molecular Biology · Life Sciences

13h-index1.1kcitations72works4.42yr avg
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Research Topics

Genomics and Phylogenetic Studies(20), Genetic diversity and population structure(13), Evolution and Genetic Dynamics(11), Evolution and Paleontology Studies(9), Cancer Genomics and Diagnostics(7)

Publications72 total

Filtering for Highly Variable Genes and High-Quality Spots Improves Phylogenetic Analysis of Cancer Spatial Transcriptomics Visium Data
Journal of Computational Biology·2025
Accuracy and Scalability of Machine Learning Methods for Genotype-Phenotype Association Data
2025Open Access
The Fossilized Birth–Death Model Is Identifiable
Systematic Biology·2024· 18 citedOpen Access
An Automated Convergence Diagnostic for Phylogenetic MCMC Analyses
IEEE/ACM Transactions on Computational Biology and Bioinformatics·2024· 2 cited
Estimating the mean in the space of ranked phylogenetic trees
Bioinformatics·2024· 3 citedOpen Access
Filtering for highly variable genes and high quality spots improves phylogenetic analysis of cancer spatial transcriptomics Visium data
2024
Accurate Bayesian phylogenetic point estimation using a tree distribution parameterized by clade probabilities
2024· 10 citedOpen Access
The Fossilised Birth-Death Model is Identifiable
2024· 4 citedOpen Access
Ranked Subtree Prune and Regraft
Bulletin of Mathematical Biology·2024· 3 citedOpen Access
An automated convergence diagnostic for phylogenetic MCMC analyses
2023· 3 citedOpen Access
Ranked Subtree Prune and Regraft
2023· 1 citedOpen Access
Estimating the mean in the space of ranked phylogenetic trees
2023· 2 citedOpen Access
A fast lasso-based method for inferring higher-order interactions
PLoS Computational Biology·2022· 3 citedOpen Access
Testing for Phylogenetic Signal in Single-Cell RNA-Seq Data
Journal of Computational Biology·2022· 9 citedOpen Access
SNVformer: An Attention-based Deep Neural Network for GWAS Data
2022· 4 citedOpen Access
Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution
Molecular Biology and Evolution·2022· 19 citedOpen Access
Online Bayesian Analysis with BEAST 2
2022· 10 citedOpen Access
Tuberous sclerosis complex: a complex case.
PubMed·2022· 2 citedOpen Access
Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software
Genome biology·2022· 26 citedOpen Access
Additional file 3 of Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software
Figshare·2022Open Access
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Frequent Co-authors

Niko Beerenwinkel(10), Lena Collienne(8), Kieran Elmes(7), Alexei J. Drummond(5), Lars Berling(5), Lisa Lamberti(4), Chris Whidden(4), Jiří C. Moravec(4), Remco Bouckaert(4), Alison L. Gould(3), Eric W. Jones(3), Benjamin Obadia(3), Nikolaos Korasidis(3), Jean M. Carlson(3), William B. Ludington(3), Timothy G. Vaughan(3), Kristina Crona(3), Devin Greene(3), Pavel N. Gavryushkin(3), Захар И. Попов(3)